GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001073-TA|BGIBMGA001073-PA|IPR000462|CDP-alcohol
phosphatidyltransferase
         (454 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)             122   8e-28
SB_8402| Best HMM Match : DUF981 (HMM E-Value=7.3)                     32   1.1  
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)                   30   3.4  
SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.5  
SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)                30   4.5  

>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score =  122 bits (293), Expect = 8e-28
 Identities = 59/169 (34%), Positives = 104/169 (61%)

Query: 247 ALPTIKISVNLISNYVVVLFTLYLVAAYXXXXXXXXXXXXXSTVAGTSILSPVIPFSLVV 306
           ++P + I+    +  + VL TLY + +              ST+AGTS++SP+ P ++V+
Sbjct: 75  SVPFLNITFKQGTMIIAVLGTLYTLCSIFSQIYQGGMGKNGSTIAGTSVVSPLFPITIVL 134

Query: 307 VPAFIIFQKSESHVYENHPALYILAFGMVTAKVTNKLVVAHMTKSEMEYYDWSLLGPAML 366
             A+   + S S ++  +P L+++A+G++ AKVT KLVVA M+KS +E  D ++LG  ++
Sbjct: 135 YMAYTTAKTSRSSLFLRYPCLFVMAYGLMCAKVTIKLVVACMSKSPLEVKDATMLGGVIM 194

Query: 367 FLNQYFNNALPEYWVLWLCTVWVCGELVRYCGQVCREICDHLDIQLFRI 415
            LN ++ + + EY +L L  ++V  +L RYC  +C +ICD L+I++F I
Sbjct: 195 LLNTHYGSHIDEYLMLCLLLLYVVFDLCRYCVILCNQICDFLNIRVFSI 243



 Score = 91.1 bits (216), Expect = 2e-18
 Identities = 40/74 (54%), Positives = 50/74 (67%)

Query: 8  ILNAAQLKRLSEHKYSCTSASVLDAWLQPWWCWLVSKTPLWLAPNLITILGLIVNIVTTL 67
          I+N AQL+RL++HKYS  S  +LD   Q +W WLV + PLWLAPN IT LGL +N  T+L
Sbjct: 4  IMNEAQLRRLAQHKYSAQSTEILDPIFQVYWRWLVQQVPLWLAPNTITFLGLFINAATSL 63

Query: 68 ILVWYSPDARQDPP 81
          IL  Y P A+   P
Sbjct: 64 ILFVYCPQAKGSVP 77



 Score = 36.3 bits (80), Expect = 0.051
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 209 LEIRYSVALAAIVGAFLTIGTLAAAIVSGGVGKNGSTVALPTIKISVNLISNYVVVLFTL 268
           +  +    + A++G   T+ ++ + I  GG+GKNGST+A  ++   V+ +    +VL+  
Sbjct: 81  ITFKQGTMIIAVLGTLYTLCSIFSQIYQGGMGKNGSTIAGTSV---VSPLFPITIVLYMA 137

Query: 269 YLVA 272
           Y  A
Sbjct: 138 YTTA 141


>SB_8402| Best HMM Match : DUF981 (HMM E-Value=7.3)
          Length = 202

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 11/118 (9%)

Query: 299 VIPFSLVVVPAFIIFQK----SESHVYENHPALYILAFGMVTAKVTNKLVVAHMTKSEME 354
           ++PF L +   F++F      S S+V  N P L + A G+V + +T +L+V+ M     E
Sbjct: 68  MMPF-LPIAAQFLLFTTWVLISPSNVLLNQPRLLLSAIGIVFSNITCRLIVSTMCGEPCE 126

Query: 355 YYDWSLLGP--AMLFLNQYFNNALPEYWVLWLCTVWVCGELVRYCGQVCREICDHLDI 410
            ++  LL P  A+LF+  +      E   L   T  V    V Y   +C   C H DI
Sbjct: 127 RFN-ILLYPLAAILFVVPFLKAEGTEVTALVFYTFLVAVLHVHY--GICVVSC-HDDI 180


>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
          Length = 1790

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 383 WLCT-VWVCGELVRYCGQVCREICDHLDIQLFRI 415
           W C   W  G  +++C  VC+   +HLD  L R+
Sbjct: 820 WSCAGQWSVGTRLQFCVDVCKRTFEHLDALLRRV 853


>SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 4/90 (4%)

Query: 322 ENHPALYILAFGMVTAKVTNKLVVAHMTKSEMEYYDWSLLGPAMLFLNQYFNNALPEY-- 379
           +  PA+ I     +  K+ +   VA+       +     + P+ L   Q+ +N +  Y  
Sbjct: 329 DGRPAMQITLGDAIQQKMISSTTVAYFLGRIYLFLIKCGVDPSKLRFRQHMSNEMAHYAC 388

Query: 380 --WVLWLCTVWVCGELVRYCGQVCREICDH 407
             W   LCT +   E V    + C ++C H
Sbjct: 389 DCWDAELCTSYGWIECVGCADRACYDLCQH 418


>SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)
          Length = 252

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 85  CALCALGVFVYQSLDAIDGKQARRTGSQSPLGELFDHGCDSISTVFIA-LGACIAVKLGE 143
           CA+ A+GV++  S D + G  +R TG+ +            I TV +A L  C A+K  +
Sbjct: 26  CAIFAIGVWIISSKDEVAGDYSRLTGTINYKTAPILCIVIGIVTVIVAFLACCGALKESQ 85

Query: 144 YPTWMFFQCFCAMTLFYCAHWQAYVTGTLKMGRID 178
               M    F  +T  +C    A V   +   RI+
Sbjct: 86  ---CMLGTYFGLVTAIFCLEVTAIVLAYVYRERIE 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.327    0.138    0.451 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,613,893
Number of Sequences: 59808
Number of extensions: 515100
Number of successful extensions: 1412
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1409
Number of HSP's gapped (non-prelim): 7
length of query: 454
length of database: 16,821,457
effective HSP length: 84
effective length of query: 370
effective length of database: 11,797,585
effective search space: 4365106450
effective search space used: 4365106450
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 62 (29.1 bits)