GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001073-TA|BGIBMGA001073-PA|IPR000462|CDP-alcohol
phosphatidyltransferase
         (454 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   9.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   9.2  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 9.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 332 FGMVTAKVTNKLVVAHMTKSEMEY 355
           FGM  + VTN L  + +T   + Y
Sbjct: 255 FGMALSPVTNNLYYSPLTSHSLYY 278


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 9.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 49  LAPNLITILGLIVNIVTTLILVWYSP 74
           L  +   IL  I+  +  +I++WYSP
Sbjct: 263 LIVDFFMILNEIIMKLVGIIIMWYSP 288


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.138    0.451 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,161
Number of Sequences: 429
Number of extensions: 4475
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 454
length of database: 140,377
effective HSP length: 60
effective length of query: 394
effective length of database: 114,637
effective search space: 45166978
effective search space used: 45166978
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)