Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001072-TA|BGIBMGA001072-PA|IPR002110|Ankyrin,
IPR013069|BTB/POZ, IPR009072|Histone-fold, IPR000210|BTB
         (1133 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                29   0.21 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   4.6  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    24   8.1  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 29.1 bits (62), Expect = 0.21
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 8/83 (9%)

Query: 583 TLLPPAG-LDATDA-SGMTVLMKAALAGDDQIVTMLLEAGADPNVETGGSSAAH-----C 635
           T  P +G L A+ A SG++ +  +  +G ++   +LL+A  +PN     S A+H      
Sbjct: 233 TSTPGSGSLPASPADSGVSDVESSTSSGGNEDANLLLKARLNPNSSLQPSLASHHSHLSS 292

Query: 636 AMPLSP-RSPGTHQSNPAYTPPT 657
           A+  S   SPG + S   + PP+
Sbjct: 293 ALGRSACHSPGVYPSTAGFLPPS 315


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 10/75 (13%)

Query: 942  NNPSLADVTFRVEGRLFYGHKIVLVSESXXXXXXXXXXXXSSEALPPTNTAPPLVQINDI 1001
            ++    DVT   +GR    H++VL + S              E L  T    P++ + D+
Sbjct: 27   DDEDFVDVTLACDGRSLKAHRVVLSACSPYF----------RELLKSTPCKHPVIVLQDV 76

Query: 1002 RYHIFEQVMKYLYSG 1016
             +     +++++Y G
Sbjct: 77   AFSDLHALVEFIYHG 91


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.8 bits (49), Expect = 8.1
 Identities = 10/15 (66%), Positives = 11/15 (73%)

Query: 628 GGSSAAHCAMPLSPR 642
           GGSSA  CA+ L PR
Sbjct: 191 GGSSALACAIMLGPR 205


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.134    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,834
Number of Sequences: 429
Number of extensions: 8647
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 3
length of query: 1133
length of database: 140,377
effective HSP length: 65
effective length of query: 1068
effective length of database: 112,492
effective search space: 120141456
effective search space used: 120141456
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)