GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001072-TA|BGIBMGA001072-PA|IPR002110|Ankyrin,
IPR013069|BTB/POZ, IPR009072|Histone-fold, IPR000210|BTB
         (1133 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom...    38   0.006
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    33   0.30 
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    31   0.69 
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    29   3.7  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    29   4.9  

>SPBP16F5.05c |||ribosome biogenesis protein
           Nop8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 24/86 (27%), Positives = 41/86 (47%)

Query: 541 EEAIEPVWSRCTRTPDELNRVALGLAQRALLSGRPEIVGGIRTLLPPAGLDATDASGMTV 600
           EE ++ +  +C +     +         A  +G   +V  I   L    ++A + SG T 
Sbjct: 15  EELLDEIIEKCPQELSRRDENGNSGLHMASANGHIAVVQKIIPYLNKEVINAQNESGNTA 74

Query: 601 LMKAALAGDDQIVTMLLEAGADPNVE 626
           +  AAL G  +I  +LLEAG DP+++
Sbjct: 75  MHWAALNGHAEICKLLLEAGGDPHIK 100


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 677 ECARRLLSAGARVDGAPARGDDVCTLTPLQVACGVGNLELVQLLLSNGA 725
           EC + LL  GA     P+  D + + TPL +A   G  E+V +L+++GA
Sbjct: 381 ECVKMLLKLGAN----PSARDFLNSWTPLMLASATGLSEIVSILVASGA 425


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 20/44 (45%), Positives = 22/44 (50%)

Query: 590 LDATDASGMTVLMKAALAGDDQIVTMLLEAGADPNVETGGSSAA 633
           ++ATD  G T L  AAL     I   LLE GAD N   G   AA
Sbjct: 27  VNATDEGGATALHWAALNQQIPICKFLLEHGADVNAIGGDLQAA 70


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/27 (55%), Positives = 16/27 (59%)

Query: 701 TLTPLQVACGVGNLELVQLLLSNGADP 727
           T TPL  A    N +LV  LL NGADP
Sbjct: 433 TSTPLHYAVTQKNAKLVAKLLRNGADP 459


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 703 TPLQVACGVGNLELVQLLLSNGADPF 728
           T L VA    + ELV+ LL NGADP+
Sbjct: 191 TYLHVATKAKDAELVKWLLDNGADPY 216


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.134    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,949,071
Number of Sequences: 5004
Number of extensions: 129860
Number of successful extensions: 306
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 296
Number of HSP's gapped (non-prelim): 11
length of query: 1133
length of database: 2,362,478
effective HSP length: 80
effective length of query: 1053
effective length of database: 1,962,158
effective search space: 2066152374
effective search space used: 2066152374
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)