Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001070-TA|BGIBMGA001070-PA|IPR005225|Small GTP-binding
protein domain, IPR006689|ARF/SAR superfamily,
IPR006688|ADP-ribosylation factor, IPR006687|GTP-binding protein SAR1,
IPR003579|Ras small GTPase, Rab type
         (164 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    25   0.42 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    25   0.42 
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   3.9  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 24.6 bits (51), Expect = 0.42
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 3   ILILGLDGAGKTTILYKL 20
           + ILG  GAGKTT+L  L
Sbjct: 107 LAILGSSGAGKTTLLNTL 124


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 24.6 bits (51), Expect = 0.42
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 3   ILILGLDGAGKTTILYKL 20
           + ILG  GAGKTT+L  L
Sbjct: 107 LAILGSSGAGKTTLLNTL 124


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 52  GGQTSIRPYWRCYYG 66
           G +TS   YW C+ G
Sbjct: 107 GHETSCTRYWTCWNG 121


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.138    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,660
Number of Sequences: 317
Number of extensions: 1163
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 164
length of database: 114,650
effective HSP length: 52
effective length of query: 112
effective length of database: 98,166
effective search space: 10994592
effective search space used: 10994592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)