Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001070-TA|BGIBMGA001070-PA|IPR005225|Small GTP-binding
protein domain, IPR006689|ARF/SAR superfamily,
IPR006688|ADP-ribosylation factor, IPR006687|GTP-binding protein SAR1,
IPR003579|Ras small GTPase, Rab type
         (164 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   1.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.2  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   8.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   8.2  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 138 IFKTSAVRGEGLDQAMDWLSNA 159
           +F   A  G+G  ++ DWL+NA
Sbjct: 71  LFPGMAAAGKGAARSDDWLANA 92


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 87  KDELVHMLREEELANAILVVLANKQ 111
           K +  + +REE LAN +L  L+ K+
Sbjct: 820 KSDSRYTIREEILANGVLSDLSIKR 844


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 32  IGFNVEQVTYKNLK 45
           +GFNV+ V+ K L+
Sbjct: 251 VGFNVKNVSVKELR 264


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 32  IGFNVEQVTYKNLK 45
           +GFNV+ V+ K L+
Sbjct: 308 VGFNVKNVSVKELR 321


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,371
Number of Sequences: 429
Number of extensions: 1487
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 164
length of database: 140,377
effective HSP length: 53
effective length of query: 111
effective length of database: 117,640
effective search space: 13058040
effective search space used: 13058040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)