Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001068-TA|BGIBMGA001068-PA|IPR002529|Fumarylacetoacetate
(FAA) hydrolase
         (285 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    26   0.28 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    26   0.28 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    26   0.28 
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    21   7.9  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   7.9  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   7.9  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   7.9  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 64  ITLKAPVHGNDKVLCVGLNYKDHCEEQKLTPPELPFI 100
           I L  PV  +  +   G+ Y+D C   +  PP L F+
Sbjct: 166 INLSVPVLLSGLIAMCGMYYRDECSFAESIPPYLFFV 202


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 64  ITLKAPVHGNDKVLCVGLNYKDHCEEQKLTPPELPFI 100
           I L  PV  +  +   G+ Y+D C   +  PP L F+
Sbjct: 399 INLSVPVLLSGLIAMCGMYYRDECSFAESIPPYLFFV 435


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 64  ITLKAPVHGNDKVLCVGLNYKDHCEEQKLTPPELPFI 100
           I L  PV  +  +   G+ Y+D C   +  PP L F+
Sbjct: 399 INLSVPVLLSGLIAMCGMYYRDECSFAESIPPYLFFV 435


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 255 YRNPPEFLQPGDVIT 269
           YR+ P F QP  ++T
Sbjct: 119 YRDEPRFSQPHQILT 133


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 255 YRNPPEFLQPGDVIT 269
           YR+ P F QP  ++T
Sbjct: 279 YRDEPRFSQPHQILT 293


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 255 YRNPPEFLQPGDVIT 269
           YR+ P F QP  ++T
Sbjct: 279 YRDEPRFSQPHQILT 293


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 89  EQKLTPPELPFIFNK 103
           E+  TPP LP ++ K
Sbjct: 135 EKPYTPPRLPTVYGK 149


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.138    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,770
Number of Sequences: 317
Number of extensions: 2762
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 7
length of query: 285
length of database: 114,650
effective HSP length: 56
effective length of query: 229
effective length of database: 96,898
effective search space: 22189642
effective search space used: 22189642
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)