GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001068-TA|BGIBMGA001068-PA|IPR002529|Fumarylacetoacetate
(FAA) hydrolase
         (285 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c...   103   4e-23
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    29   1.0  
SPCC1840.11 |csl4|SPCC965.01|exosome subunit Csl4|Schizosaccharo...    27   2.3  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    27   3.1  
SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal...    27   4.1  
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch...    26   5.4  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    26   5.4  
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   7.1  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   7.1  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.4  

>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score =  103 bits (246), Expect = 4e-23
 Identities = 67/202 (33%), Positives = 107/202 (52%), Gaps = 12/202 (5%)

Query: 75  KVLCVGLNYKDHCEEQKLTPPELPFIFNKFPSTVVGP-NDTIKLKMDVSKAVVCEIELTV 133
           KV+C+G NY  H  E     P  PF F K  S +V P +  + +  DVS     E+ L +
Sbjct: 7   KVVCIGRNYAAHIRELNNPFPTKPFFFLKPTSAIVEPGHGNLIIPPDVSAHYEVELGLIM 66

Query: 134 VIGKKASKVDSSHAF-DYVLGYTIAQDIGATDWEKNKKISQL--LLGKAMDTFCPIGPWI 190
                A +  SS+++ D +  Y +  D+ A + +   K   L     K  DTF P+GP I
Sbjct: 67  KDRLPARRPVSSNSWLDSIGAYFVGIDMTARNIQNEAKKKGLPWSFAKGYDTFLPVGP-I 125

Query: 191 VTSDEIGNPQNLNVKCSINGVQKQKSNTNQFIHKIPDIIARLSNVMTLLPGDIILTGTPG 250
           +    I +P N+ ++ S+NG   QK +T+  ++KIP I + ++  M+L PGD++LTGTP 
Sbjct: 126 IPKHLIPDPHNVILELSLNGKVVQKDSTSLMLNKIPKIFSSITEAMSLNPGDLVLTGTPK 185

Query: 251 GVGVYRNPPEFLQPGDVITSEI 272
           GVG        + PGD++++ +
Sbjct: 186 GVGP-------VVPGDILSARL 200


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 5/133 (3%)

Query: 117 LKMDVSKAVVCEIELTVVIGKKASKVDSSHAFDYVLGYTIAQDIGATDWEKNKKISQLLL 176
           L  D+ + V   ++L  +I    + VD+      +   + A D         +K+  +L 
Sbjct: 302 LSKDLERKVSSRLQLDTIISNIDNAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVL- 360

Query: 177 GKAMDTFCPIGPWIVTSDEIGNPQNLNVKCSINGVQKQKSNTNQFIHKIPDIIARLSNVM 236
               DT       I  + +  NPQN++++     V+K+  +      K+ DI++ L NV 
Sbjct: 361 ENVNDTLAR-SEEIDATIQTYNPQNIDLEDE--AVEKEWQDLVAEEQKVEDIVSTLGNVS 417

Query: 237 TLLPGD-IILTGT 248
              P D   LT T
Sbjct: 418 LKTPSDTFTLTNT 430


>SPCC1840.11 |csl4|SPCC965.01|exosome subunit
           Csl4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 181

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/47 (27%), Positives = 21/47 (44%)

Query: 238 LLPGDIILTGTPGGVGVYRNPPEFLQPGDVITSEIENIGTFETRVEE 284
           +LPG ++  G P G G  +     +     I    +N  T+  +VEE
Sbjct: 4   VLPGQVVARGAPNGEGTVKRGDYIISTRTGIFDPEKNSVTYPRKVEE 50


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 237 TLLPGDIILTGTPGGVGVYRNPPEFLQPG 265
           +LLP +I     P G G+Y+NP     PG
Sbjct: 232 SLLPSNITAILYPDGRGLYQNPDGTFSPG 260


>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
           catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 141 KVDSSHAFDYVLGYTIAQDIGATDWEKNKK 170
           K+   H +D VLG   A+D G   W   +K
Sbjct: 110 KLQKEHNYDIVLGTRYAKDGGVYGWNLKRK 139


>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 287

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 103 KFPSTVVGPNDTIKLKM---DVSKAVVCEIELTVVIGKKASKVDSSHAFDYVLGYTI 156
           K P+ ++   D   LK+       A++ E E+T VI K   ++ +    D+V+ YTI
Sbjct: 210 KLPNDLLNFADRHHLKLFFHSDPSALLSESEITSVIHKACPEIPNPARVDWVIRYTI 266


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 190 IVTSDEIGNPQNLNVKCSINGVQKQKSNTNQFIHKIP-DIIARLSNVMTLL 239
           I+ S  I   Q+++V  SIN ++K+KSNT   + K+  D I  L    T+L
Sbjct: 619 IILSGPIITEQDVDV--SINRIRKEKSNTIFTVPKVNWDDIGGLEEAKTVL 667


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 73  NDKVLCVGLNYKDHCEEQKLTPPELPFI 100
           ND    +  +  DH +  ++TP ELPF+
Sbjct: 247 NDSTAKIETSIHDHRDISRITPFELPFV 274


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 190 IVTSDEIGNPQNLNVKCSINGVQKQKSNTNQFIHKIPDII 229
           +++ DE G  +N  V  S + VQK ++ +    H +P I+
Sbjct: 40  VLSDDEDGTIENSKVPASKSKVQK-RNESEDISHSLPSIV 78


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 245 LTGTPGGVGVYRNPPEFLQPGDVITSEIENIGTF 278
           LT +   + +YR     L P + I S+I+N GT+
Sbjct: 43  LTSSTVTLTLYRGGNSALTPIETIASDIDNTGTY 76


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.138    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,320,852
Number of Sequences: 5004
Number of extensions: 54521
Number of successful extensions: 161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 10
length of query: 285
length of database: 2,362,478
effective HSP length: 72
effective length of query: 213
effective length of database: 2,002,190
effective search space: 426466470
effective search space used: 426466470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)