GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001068-TA|BGIBMGA001068-PA|IPR002529|Fumarylacetoacetate
(FAA) hydrolase
         (285 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   1e-14
SB_37341| Best HMM Match : FAA_hydrolase (HMM E-Value=3.3e-08)         65   7e-11
SB_48799| Best HMM Match : FAA_hydrolase (HMM E-Value=2.6)             59   5e-09
SB_42832| Best HMM Match : ShTK (HMM E-Value=4.6e-07)                  30   2.5  
SB_46290| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33)         29   3.3  
SB_51460| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33)         29   3.3  
SB_29424| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)             29   4.4  
SB_22177| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=4.5e-11)          29   4.4  
SB_51094| Best HMM Match : VWA (HMM E-Value=0)                         29   4.4  
SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_22920| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_4941| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.8  
SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)           28   7.6  
SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06)                   28   7.6  

>SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 55/157 (35%), Positives = 83/157 (52%), Gaps = 26/157 (16%)

Query: 128  EIELTVVIGKKASKVDSSHAFDYVLGYTIAQDIGATDWEKNKKISQLLLGKAMDTFCPIG 187
            E+EL VVIG+K + ++   A D+V GY +A D+  TD    + + + L  K         
Sbjct: 882  EVELGVVIGQKGANINEEAAMDHVGGYALALDM--TD----RTLQEELKKKGH------- 928

Query: 188  PWIVTSDEIGNPQNLNVKCSINGVQKQKSNTNQFIHKIPDIIARLSNVMTLLPGDIILTG 247
            PW +      NP NL +   ++GV KQ+  T+  +  +P +I+ +S +MTL  GD+ILTG
Sbjct: 929  PWAI------NPHNLKLWLKVDGVTKQEGVTSDMMFTVPFLISYISKIMTLEEGDLILTG 982

Query: 248  TPGGVGVYRNPPEFLQPGDVITSEIENIGTFETRVEE 284
            TP GV         ++ GD IT+ IE I      VE+
Sbjct: 983  TPAGVSA-------VKEGDNITAGIEGIVEMAFSVEK 1012


>SB_37341| Best HMM Match : FAA_hydrolase (HMM E-Value=3.3e-08)
          Length = 223

 Score = 64.9 bits (151), Expect = 7e-11
 Identities = 25/54 (46%), Positives = 35/54 (64%)

Query: 62  SGITLKAPVHGNDKVLCVGLNYKDHCEEQKLTPPELPFIFNKFPSTVVGPNDTI 115
           S + LKAP++  +K++C G+NY DHC EQ +  P  P IF+KF S +  P D I
Sbjct: 16  SNLKLKAPIYNPEKIICTGMNYADHCYEQNMPIPTEPVIFSKFASAIAAPGDPI 69



 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 32/68 (47%), Positives = 38/68 (55%), Gaps = 7/68 (10%)

Query: 136 GKKASKVD-------SSHAFDYVLGYTIAQDIGATDWEKNKKISQLLLGKAMDTFCPIGP 188
           G K+ KVD          A DYV GYT+A D+ A DW+  K   Q LLGK  D + P+GP
Sbjct: 154 GAKSEKVDLIFPGGGEEDAMDYVAGYTVAHDVSARDWQLKKNAGQWLLGKTGDAYLPLGP 213

Query: 189 WIVTSDEI 196
            IVT D I
Sbjct: 214 AIVTKDAI 221


>SB_48799| Best HMM Match : FAA_hydrolase (HMM E-Value=2.6)
          Length = 77

 Score = 58.8 bits (136), Expect = 5e-09
 Identities = 27/63 (42%), Positives = 39/63 (61%)

Query: 214 QKSNTNQFIHKIPDIIARLSNVMTLLPGDIILTGTPGGVGVYRNPPEFLQPGDVITSEIE 273
           Q  NT   I  +  +++ +S  +TL PGDI+ TGTP GVG  + P  FL+ GDV+T  I+
Sbjct: 2   QTGNTRTMIFDVKTLVSYVSEFITLEPGDILTTGTPPGVGEGKKPQVFLKAGDVMTLGIQ 61

Query: 274 NIG 276
            +G
Sbjct: 62  KLG 64


>SB_42832| Best HMM Match : ShTK (HMM E-Value=4.6e-07)
          Length = 500

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 151 VLGYTIAQD-IGATDWEKNKKISQLLLGKAMDTFCPIGPWIV-TSDEIGNPQNLNVKCSI 208
           V G T++Q  +    W K +K+ QL+   A     P G W+   +  + +  ++ + C+I
Sbjct: 201 VPGVTVSQPKVRGWQWGKRRKLMQLVTSPARTRDFPGGRWVTDCATAVSSTISIPIPCAI 260

Query: 209 NG 210
            G
Sbjct: 261 TG 262


>SB_46290| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33)
          Length = 1019

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/59 (33%), Positives = 29/59 (49%)

Query: 91  KLTPPELPFIFNKFPSTVVGPNDTIKLKMDVSKAVVCEIELTVVIGKKASKVDSSHAFD 149
           K+T PE PF      S V    D + L + V       ++  V++GK+ SK DS  A+D
Sbjct: 443 KVTVPEKPFTRRGVLSIVNSVYDPLGLAVPVMLEGRTMLQKLVLMGKRRSKDDSPLAWD 501


>SB_51460| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33)
          Length = 1584

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/59 (33%), Positives = 29/59 (49%)

Query: 91  KLTPPELPFIFNKFPSTVVGPNDTIKLKMDVSKAVVCEIELTVVIGKKASKVDSSHAFD 149
           K+T PE PF      S V    D + L + V       ++  V++GK+ SK DS  A+D
Sbjct: 835 KVTVPEKPFTRRGVLSIVNSVYDPLGLAVPVMLEGRTMLQKLVLMGKRRSKDDSPLAWD 893


>SB_29424| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)
          Length = 712

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 100 IFNKFPSTVVG-PNDTIKLKMDVSKAVVCEIELTVVIGKKAS 140
           +  +  STV+G  N++  ++  V+ AV+C++  + VIG KA+
Sbjct: 533 VCREMDSTVIGGENNSNMIRKGVNGAVICKVANSYVIGGKAN 574


>SB_22177| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=4.5e-11)
          Length = 1170

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/59 (33%), Positives = 29/59 (49%)

Query: 91  KLTPPELPFIFNKFPSTVVGPNDTIKLKMDVSKAVVCEIELTVVIGKKASKVDSSHAFD 149
           K+T PE PF      S V    D + L + V       ++  V++GK+ SK DS  A+D
Sbjct: 668 KVTVPEKPFTRRGVLSIVNSVYDPLGLAVPVMLEGRKMLQKLVLMGKRTSKDDSPLAWD 726


>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3544

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 118  KMDVSKAVVCEIELTVVIGKKASKVDSSHAFDY--VLGYTIAQDIGATDWEKNKKI 171
            K+ +++  + ++ +T++     S VDSS  +DY    G TI    G   W+  +KI
Sbjct: 1090 KLKLARKRLGDLGVTIITVALGSTVDSSKIYDYCPYRGNTIYSKDGGISWDMAEKI 1145


>SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2141

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 158  QDIGATDWEKNKKISQLLLGKAMDTFCPIG 187
            Q I A DWE   K  +++LG++  T C +G
Sbjct: 1918 QKIYAMDWEPGAKRLRVMLGRSGKTVCTLG 1947


>SB_22920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 9/84 (10%)

Query: 163 TDWEKNKKISQLLLGKAMDTFCPIGPWIVTSDEIGNPQNLNVKCS--INGVQKQKSNTNQ 220
           TDW+  K+ S   L   +       P ++  ++ GN Q L       +  ++  ++  + 
Sbjct: 17  TDWQSVKQQSNARLDSTL-------PCVICKEDFGNLQQLQSITDRLVGSMEASRATVDN 69

Query: 221 FIHKIPDIIARLSNVMTLLPGDII 244
            + +I   +A   N+M+ + GD I
Sbjct: 70  LMSEINQSLASSRNIMSQIEGDCI 93


>SB_4941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 213 KQKSNTNQFIHKIPDIIARLSNVMTLLPGDII 244
           KQK   ++      D+I+R+S  + ++PGD+I
Sbjct: 43  KQKQGIHELTDAFYDVISRMSASLPIVPGDLI 74


>SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 5/43 (11%)

Query: 198 NPQNLNVKCSINGVQKQKSNTNQFIHKIPDIIARLSNVMTLLP 240
           NP N     + N +QK  S+ N F   +P ++  LSNVM+L P
Sbjct: 415 NPNNCVQVSTTNSIQKTPSSLNAF---VPALL--LSNVMSLAP 452


>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3287

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 9/110 (8%)

Query: 70   VHGNDKVLCVGLNYKDHCEEQKLTPPELPFIFNKFPSTVVGPNDTIKLKMDVSKAVVCEI 129
            + G  +  CV   + +HCE   L PP  P    +  S  V  N+ ++L + ++  +V  I
Sbjct: 2925 LEGGYRCTCVEGYFGEHCENGTLAPP--PSSAPRQASNDV--NNDVELGLSIAFVLVVLI 2980

Query: 130  ELTVVI----GKKASKVDSSHAFDYVLGYTIAQDIGATDWEKNKKISQLL 175
               V++     KKA+K +S   +     Y     +   D++K  K  QLL
Sbjct: 2981 VALVILYFYFRKKAAK-ESGKYYPSEEEYKGGYPMSPLDFDKLDKEEQLL 3029


>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
          Length = 3015

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/50 (24%), Positives = 27/50 (54%)

Query: 111 PNDTIKLKMDVSKAVVCEIELTVVIGKKASKVDSSHAFDYVLGYTIAQDI 160
           P+   +  + +  A+   ++  VV+G +   +D+  +FD +LG T  +D+
Sbjct: 147 PDPITQRLLQIKAALPGVVQNVVVLGFRPGSIDALASFDVLLGKTTMKDV 196


>SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06)
          Length = 773

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 5/43 (11%)

Query: 198 NPQNLNVKCSINGVQKQKSNTNQFIHKIPDIIARLSNVMTLLP 240
           NP N     + N +QK  S+ N F   +P ++  LSNVM+L P
Sbjct: 126 NPNNCVQVSTTNSIQKTPSSLNAF---VPALL--LSNVMSLAP 163


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.138    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,436,492
Number of Sequences: 59808
Number of extensions: 377200
Number of successful extensions: 725
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 714
Number of HSP's gapped (non-prelim): 18
length of query: 285
length of database: 16,821,457
effective HSP length: 81
effective length of query: 204
effective length of database: 11,977,009
effective search space: 2443309836
effective search space used: 2443309836
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)