GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001068-TA|BGIBMGA001068-PA|IPR002529|Fumarylacetoacetate
(FAA) hydrolase
         (285 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16621-5|AAA28230.1|  214|Caenorhabditis elegans Hypothetical pr...   125   3e-29
U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine rece...    28   6.6  
AF016688-9|AAN65322.1|  816|Caenorhabditis elegans Hypothetical ...    28   6.6  
AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical ...    28   6.6  
Z68161-9|CAA92298.2|  688|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>L16621-5|AAA28230.1|  214|Caenorhabditis elegans Hypothetical
           protein ZK688.3 protein.
          Length = 214

 Score =  125 bits (302), Expect = 3e-29
 Identities = 70/180 (38%), Positives = 101/180 (56%), Gaps = 4/180 (2%)

Query: 75  KVLCVGLNYKDHCEEQKLTPPELPFIFNKFPSTVVGPNDTIKLKMDVSKAVVCEIELTVV 134
           K++CVG NYKDH  E     P+ P +F K  ++ +   + I         +  E+EL VV
Sbjct: 13  KIVCVGRNYKDHALELGNAIPKKPMLFVKTVNSFIVEGEPIVAPPGCQN-LHQEVELGVV 71

Query: 135 IGKKASKVDSSHAFDYVLGYTIAQDIGATDW--EKNKKISQLLLGKAMDTFCPIGPWIVT 192
           I KKAS++  S A DY+ GYT+A D+ A D+  E  K  +   L K+ D  CPIG ++  
Sbjct: 72  ISKKASRISKSDAMDYIGGYTVALDMTARDFQDEAKKAGAPWFLAKSFDGSCPIGGFLPV 131

Query: 193 SDEIGNPQNLNVKCSINGVQKQKSNTNQFIHKIPDIIARLSNVMTLLPGDIILTGTPGGV 252
           SD I NP ++ + C ING  +Q+  T+  I  IP ++   +   TL  GD++LTGTP GV
Sbjct: 132 SD-IPNPHDVELFCKINGKDQQRCRTDVMIFDIPTLLEYTTQFFTLEVGDVVLTGTPAGV 190


>U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine
           receptor, class x protein74 protein.
          Length = 323

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 77  LCVGLNYKDHCEEQKLTPPELP-FIFNKFPSTVVGPNDTIKLKMDVSKAVVCEIELTVVI 135
           L +  NY     +Q LT   +  +++N+F S ++  N  I +   +    +C ++++VVI
Sbjct: 67  LLLSYNYMSSTLDQTLTITTIDIYVYNEFQSLLIAINRFIAMYAPLHYNKLCSVKVSVVI 126


>AF016688-9|AAN65322.1|  816|Caenorhabditis elegans Hypothetical
           protein F18A12.8b protein.
          Length = 816

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 109 VGPNDTIKLKMDVSKAVVCEIELTVVIGKKASKVDSSHAFDYVLGYTIAQDIGATDWEKN 168
           + P+D   L  + ++ ++CEIE    + +   K D     +YVL   +  ++   D E+ 
Sbjct: 427 IAPSDLTHLFHNETEIIICEIEYLQHVSELIEKTDVGLLTNYVLWRVVQSNVRYLD-ERF 485

Query: 169 KKISQ 173
           + I Q
Sbjct: 486 EDIKQ 490


>AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical
           protein F18A12.8a protein.
          Length = 848

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 109 VGPNDTIKLKMDVSKAVVCEIELTVVIGKKASKVDSSHAFDYVLGYTIAQDIGATDWEKN 168
           + P+D   L  + ++ ++CEIE    + +   K D     +YVL   +  ++   D E+ 
Sbjct: 427 IAPSDLTHLFHNETEIIICEIEYLQHVSELIEKTDVGLLTNYVLWRVVQSNVRYLD-ERF 485

Query: 169 KKISQ 173
           + I Q
Sbjct: 486 EDIKQ 490


>Z68161-9|CAA92298.2|  688|Caenorhabditis elegans Hypothetical
           protein F20C5.5 protein.
          Length = 688

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 249 PGGVGVYRNPPEFLQPGDVITSEIENIGTFETRVEE 284
           PGG+   RN P++LQ  D     +  I   E  V+E
Sbjct: 550 PGGLKTMRNDPQWLQVVDHFCDYVRKIEKLEENVKE 585


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.138    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,164,600
Number of Sequences: 27539
Number of extensions: 302060
Number of successful extensions: 655
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 651
Number of HSP's gapped (non-prelim): 5
length of query: 285
length of database: 12,573,161
effective HSP length: 81
effective length of query: 204
effective length of database: 10,342,502
effective search space: 2109870408
effective search space used: 2109870408
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)