Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001067-TA|BGIBMGA001067-PA|undefined
(272 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster... 31 0.13
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 28 1.6
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch... 27 2.2
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 27 2.9
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.8
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac... 26 5.0
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 26 6.7
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa... 26 6.7
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 6.7
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 8.8
>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 31.5 bits (68), Expect = 0.13
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 17 VFSNTFLHYEKNVQMFKSLCSIDELMKIVR 46
+F NT YE N++++ S+C ID L ++R
Sbjct: 282 IFQNTDTEYEANMEVWLSICEIDALECVLR 311
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 124 DPVNIAKLIKESDGQNDEETVSRILKAFKEISKA 157
D A+LI S+G ++EE S +L+ KEI +A
Sbjct: 990 DKTETARLISFSNGNSEEERNSVVLRGDKEIVEA 1023
>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 229 IYRIIDTEIEPMTVFGLFYINNVPLDLISLTATYTVVLLQFAFL 272
I+ D E V Y N + L+ AT VV+L F FL
Sbjct: 213 IFAFFDVEGNYFVVLAYQYTNMLSASLLDSWATVAVVILSFIFL 256
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 3 LIQIYAGHLMNSFIVFSNTFLHYEKNVQMFKSLCSID 39
LI+ + GH+ +F F T L Y N+ M S+D
Sbjct: 264 LIKSFYGHVQANFFFFHETLLRYRLNLIMSFQNPSVD 300
>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 74 IYMVIILPISEKWVPFANIGIMNEDLEAITFVSVLYMLYDRVKY 117
IY+V LP+SEK I ++N+ ++AI + Y L Y
Sbjct: 245 IYLVSHLPVSEKHPGNIPISLVNKSVQAICSFAEHYNLLRNPSY 288
>SPBC1539.09c |trp1||anthranilate synthase component
II|Schizosaccharomyces pombe|chr 2|||Manual
Length = 759
Score = 26.2 bits (55), Expect = 5.0
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 79 ILPISEKWVPFANIGIMNE-DLEAITFVSVLYMLYDRVKYIN-QTALDP-----VNIAKL 131
I+P+ + +V + G+ + D EA +F+ V Y+L + N Q A+ V+++
Sbjct: 678 IVPLIDAYVGGESGGLGKKVDWEAASFIPVSYVLAGGLTPKNVQDAISVSRPAVVDVSSG 737
Query: 132 IKESDGQNDEETVSRILKAFKEI 154
+ E+DG+ D E + + A KE+
Sbjct: 738 V-ETDGKQDLEKIKAFINAVKEL 759
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 21 TFLHYEKN-VQMFKSLCSIDELMKIVRLEHRDLKLFIAIIL 60
+FL+Y +++ KS+C++ EL + LE R LK + +L
Sbjct: 2004 SFLNYTDGALELVKSICAVFELSHDLNLEVRFLKKSLLSLL 2044
>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.8 bits (54), Expect = 6.7
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 75 YMVIILPISEKWVPFANIGIMNEDLEAITFVSVL-YMLYDRVKYINQTALDPVNIAKLIK 133
+ V + PI K P AN +T + Y +YDR + LD K +
Sbjct: 498 FYVSLFPIGGK--PNANDFFQGYLAAPVTLAFFIGYKIYDRSHIPSLDKLDITTGLKTYE 555
Query: 134 ESDGQNDEETVSRILKAFKEISKAY 158
D + DE T + + FK+IS +
Sbjct: 556 NLDEEEDEPTTAS-KRIFKKISSVF 579
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 13 NSFIVFSNTFLHYEKNVQMFK 33
+S VF NT L Y+ NVQM K
Sbjct: 1335 SSDTVFENTDLKYDNNVQMSK 1355
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.4 bits (53), Expect = 8.8
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 134 ESDGQNDEETVSRILKAFKEISKAYKIVEKTFRVFNLSWGTFMSKNL 180
ES + D T+S + K F SKA + RV NL+W MS NL
Sbjct: 28 ESSSKEDYSTMSDLWKMF---SKAKSELSNGRRVENLTW-RLMSINL 70
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.329 0.142 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,179,645
Number of Sequences: 5004
Number of extensions: 48336
Number of successful extensions: 198
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 191
Number of HSP's gapped (non-prelim): 11
length of query: 272
length of database: 2,362,478
effective HSP length: 72
effective length of query: 200
effective length of database: 2,002,190
effective search space: 400438000
effective search space used: 400438000
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 53 (25.4 bits)
- SilkBase 1999-2023 -