Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001067-TA|BGIBMGA001067-PA|undefined
         (272 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60070.1 68418.m07532 ankyrin repeat family protein contains ...    31   0.63 
At4g29140.1 68417.m04170 MATE efflux protein-related several hyp...    29   3.3  
At2g41960.1 68415.m05191 expressed protein                             29   3.3  
At5g58480.1 68418.m07324 glycosyl hydrolase family 17 protein si...    28   5.8  
At2g20800.1 68415.m02446 pyridine nucleotide-disulphide oxidored...    28   5.8  
At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family pr...    28   5.8  
At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family pr...    28   5.8  
At1g71870.1 68414.m08308 MATE efflux family protein contains Pfa...    28   7.7  

>At5g60070.1 68418.m07532 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 548

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 28  NVQMFKSLCSIDELMKIVRLEHRDLKLFIAII--LLLSSTVIMNVYFLIYMVIILPISEK 85
           ++ +F SL  +     +V +EH+  K  +A+I  L+  + V+++V FL    +++   E+
Sbjct: 424 SIALFISLAVVVVQTSVVAIEHKAKKNMMAVINKLMWLACVLISVAFLALAFVVVGEEER 483

Query: 86  WV 87
           W+
Sbjct: 484 WL 485


>At4g29140.1 68417.m04170 MATE efflux protein-related several
           hypothetical proteins - Arabidopsis thaliana; contains
           Pfam profile PF01554: Uncharacterized membrane protein
           family
          Length = 532

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 61  LLSSTVIMNVYFLIYMVIILPISEKWVPFANIGIMNEDLEAITFVSVLYMLYDRVKYINQ 120
           LLS T+   V FL+  V  +PIS  W     I +       I  ++  Y+++     +  
Sbjct: 133 LLSLTLHRTVVFLL--VCCVPISVLWFNVGKISVYLHQDPDIAKLAQTYLIFSLPDLLTN 190

Query: 121 TALDPVNI 128
           T L P+ I
Sbjct: 191 TLLHPIRI 198


>At2g41960.1 68415.m05191 expressed protein 
          Length = 1215

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 204 QKTKGLCNLAVRNCENDIVRCHLKNIYRIIDTEIEPMTVFGLFYINNVPLD 254
           Q+++G  NL   + +ND+  CH K + ++ +  ++   V  +  I+N+P D
Sbjct: 913 QQSEGRENLV--DTQNDMPDCHEKMVEKVTEMSMDERDVLKIKNISNLPAD 961


>At5g58480.1 68418.m07324 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 476

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 139 NDEETVSRILKAFKEISKAYKIVEKTFR-VFNLSWGTFMS 177
           +  + +S     FKE +KA+K   KT+R  F+LS+ T +S
Sbjct: 212 HQNKNISLDFSLFKETAKAHKDGRKTYRNSFDLSYDTLVS 251


>At2g20800.1 68415.m02446 pyridine nucleotide-disulphide
           oxidoreductase family protein similar to GI:3718005
           alternative NADH-dehydrogenase {Yarrowia lipolytica} ;
           contains Pfam profile PF00070: Pyridine
           nucleotide-disulphide oxidoreductase
          Length = 582

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 127 NIAKLIKESDGQNDEETVSRILKAFKEISKAYKIVEKTFRVFNLSWGTFMSK 178
           NIA L+K ++G++ +  + +  +A  E+    K +  T +V +   G +++K
Sbjct: 434 NIANLLKSANGEDTQVNIEKFKQALSEVDSQMKNLPATAQVAS-QQGKYLAK 484


>At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family
           protein similar to bHLH transcription factor GBOF-1
           GI:5923912 from [Tulipa gesneriana]
          Length = 390

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/43 (37%), Positives = 22/43 (51%)

Query: 101 AITFVSVLYMLYDRVKYINQTALDPVNIAKLIKESDGQNDEET 143
           A TF   + MLY  V Y++QT     NI+ +   S G   +ET
Sbjct: 314 APTFPHNMSMLYPPVSYLSQTGFMQPNISSMSLLSGGLKRQET 356


>At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family
           protein similar to bHLH transcription factor GBOF-1
           GI:5923912 from [Tulipa gesneriana]
          Length = 390

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/43 (37%), Positives = 22/43 (51%)

Query: 101 AITFVSVLYMLYDRVKYINQTALDPVNIAKLIKESDGQNDEET 143
           A TF   + MLY  V Y++QT     NI+ +   S G   +ET
Sbjct: 314 APTFPHNMSMLYPPVSYLSQTGFMQPNISSMSLLSGGLKRQET 356


>At1g71870.1 68414.m08308 MATE efflux family protein contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 510

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/64 (25%), Positives = 28/64 (43%)

Query: 65  TVIMNVYFLIYMVIILPISEKWVPFANIGIMNEDLEAITFVSVLYMLYDRVKYINQTALD 124
           T+ ++   +I ++  LPIS  W+    I +       IT  +  Y LY     +  T L 
Sbjct: 103 TLSLHRMVVILLMASLPISLLWINLGPIMLFMGQNPEITATAAEYCLYALPDLLTNTLLQ 162

Query: 125 PVNI 128
           P+ +
Sbjct: 163 PLRV 166


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.329    0.142    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,703,955
Number of Sequences: 28952
Number of extensions: 222406
Number of successful extensions: 737
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 734
Number of HSP's gapped (non-prelim): 8
length of query: 272
length of database: 12,070,560
effective HSP length: 80
effective length of query: 192
effective length of database: 9,754,400
effective search space: 1872844800
effective search space used: 1872844800
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 59 (27.9 bits)