GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001067-TA|BGIBMGA001067-PA|undefined
         (272 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0629 + 26248960-26249236,26249766-26249894,26250291-262508...    30   2.3  
02_01_0344 + 2467191-2468282                                           29   5.3  
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486...    28   7.0  
02_01_0252 - 1657268-1657692,1657727-1658445,1658761-1659089,165...    28   7.0  
12_02_0226 + 15887835-15891188                                         28   9.2  

>03_05_0629 +
           26248960-26249236,26249766-26249894,26250291-26250847,
           26250933-26251250
          Length = 426

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 8/81 (9%)

Query: 13  NSFIVFSNTFLHYEKNVQMFKSLCS-----IDELMKIVRLEHRDLK--LFIAIILLLSST 65
           N  I F + +LH+++     + L S     I +L  I+R   RDL   LF+  +  ++  
Sbjct: 262 NFSIYFYHIYLHHQQGFSSIQKLASFLPQLIVQLALILRFS-RDLPFCLFLQTVAFVAFN 320

Query: 66  VIMNVYFLIYMVIILPISEKW 86
            +M   + ++   +LP+   W
Sbjct: 321 KVMTAQYFVWFFCLLPLILPW 341


>02_01_0344 + 2467191-2468282
          Length = 363

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 115 VKYINQTALDPVNIAKLIKESDGQNDEETVSRILKAFKEISKAYKIVEKTFR 166
           ++YI Q  L   +   L+    G N +E + + LKA +EI K  K V K +R
Sbjct: 236 LRYIKQDDLSSEDYKILM----GDNLDEVIDKRLKALEEIEKEKKRVAKAYR 283


>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
            29048829-29049210,29049370-29049513,29049593-29049777,
            29049925-29050051,29050603-29050676,29051071-29051147,
            29051256-29051292,29051453-29051619,29051800-29051983,
            29052053-29052130,29052451-29052570,29052648-29052707,
            29053057-29053179,29053848-29053941,29054019-29054197,
            29054737-29055039,29055373-29055474,29055553-29055693,
            29055831-29055995,29056168-29056344,29056432-29056554,
            29057787-29057867,29057983-29058099,29058214-29058386,
            29058846-29058923,29058994-29059141,29059755-29059877,
            29060015-29060071,29060145-29060255,29060382-29060573,
            29060690-29060863,29061263-29061373,29061462-29061531,
            29061734-29061812,29061898-29062000,29062086-29062256,
            29062348-29062470,29062548-29062661,29062935-29063041,
            29063117-29063168,29063245-29063351,29063589-29063703,
            29063819-29063929,29064016-29064153,29064230-29064352,
            29064535-29064606,29064774-29064886,29066780-29067110,
            29067199-29067381,29068669-29068863,29068943-29069110,
            29069208-29069340,29069511-29069595,29069726-29069765
          Length = 2591

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 116  KYINQTALDPVNIAKLIKESDGQNDEETVSR 146
            K++N T L+   IAKL +ESDG    +   R
Sbjct: 2560 KHLNMTGLEVRKIAKLPEESDGSESSDDDKR 2590


>02_01_0252 -
           1657268-1657692,1657727-1658445,1658761-1659089,
           1659223-1659375,1659430-1659561,1659748-1659852,
           1660020-1660193,1660283-1660352,1660458-1660639,
           1660738-1660847,1660948-1661052,1661153-1661231,
           1662128-1662168,1662283-1662358,1662455-1662589
          Length = 944

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 3/100 (3%)

Query: 15  FIVFSNTFLHYEKNVQMFKSLCSIDELMKIVRLEHRDLKLFIAIILLLSSTVIMNVYFLI 74
           F+++    L +E    +   L   +   K+  L+     + IA IL  +  +++N YFL+
Sbjct: 417 FLIWIQMILSFELPFALIPLLKFCNSSKKVGPLKESIYTVVIAWILSFA-LIVVNTYFLV 475

Query: 75  YMVIILPISEKWVPFAN--IGIMNEDLEAITFVSVLYMLY 112
           +  +   +      +AN  I ++   L A   V+V+Y+ +
Sbjct: 476 WTYVDWLVHNNLPKYANGLISVVVFALMAAYLVAVVYLTF 515


>12_02_0226 + 15887835-15891188
          Length = 1117

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 82  ISEKWVPFANIGIMNEDLEAITFVSVLYMLYDRVKYINQTALDPVNIAKLIKESDGQNDE 141
           ISE W  F NI   NE+ +  T  +    + +  K      L+ + + K + ESD +  E
Sbjct: 536 ISEAWDAFRNI---NENGQKPTLKAYTVFIQELCKA--SRPLEALKLLKEMLESDFRPSE 590

Query: 142 ETVSRIL 148
           +T SRI+
Sbjct: 591 QTFSRII 597


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.329    0.142    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,386,560
Number of Sequences: 37544
Number of extensions: 231478
Number of successful extensions: 635
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 633
Number of HSP's gapped (non-prelim): 5
length of query: 272
length of database: 14,793,348
effective HSP length: 81
effective length of query: 191
effective length of database: 11,752,284
effective search space: 2244686244
effective search space used: 2244686244
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 59 (27.9 bits)