GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001067-TA|BGIBMGA001067-PA|undefined
         (272 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81454-4|CAD89725.1|  483|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z75554-9|CAA99952.2|  278|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AY551964-1|AAS65428.1|  795|Caenorhabditis elegans enhancer of p...    28   6.2  
AL132904-22|CAC35840.2|  795|Caenorhabditis elegans Hypothetical...    28   6.2  
AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical...    28   6.2  
AF098989-3|AAK18953.2|  569|Caenorhabditis elegans Hypothetical ...    28   6.2  
AC025727-1|AAG23391.3|  429|Caenorhabditis elegans Hypothetical ...    28   8.2  

>Z81454-4|CAD89725.1|  483|Caenorhabditis elegans Hypothetical
           protein B0391.6 protein.
          Length = 483

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 2/93 (2%)

Query: 20  NTFLHYEKNVQMFKSLCSIDELMKIVRLEHRDLKLFIAIILLLSSTVIMNVYFLIYMVII 79
           N  L+Y+K ++   ++CS  ++++   L  R++     +I +  S V M    L   +  
Sbjct: 60  NHDLNYDKRLEPLSAICSPIQILRKTALRLRNVFRPRKVIHISDSQVAMRACILFDALNE 119

Query: 80  LPISEKWVPFANIGIMNEDLEAITFVSVLYMLY 112
           +PI E +  F    +++  +E   +    Y+ Y
Sbjct: 120 IPIFESYRKFCR--LVSNSMEYRDYEFWYYLFY 150


>Z75554-9|CAA99952.2|  278|Caenorhabditis elegans Hypothetical
          protein ZC455.11 protein.
          Length = 278

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 7  YAGHLMNSFIVFSNTFLHYE---KNVQMFKSLCSIDELMKIVRLEHRDLKLFIAIILLLS 63
          Y  H +   ++FSN  L+     K V  +K+   ID  + +VR+    + +F A+   + 
Sbjct: 9  YVFHSVGILMIFSNLVLNLHILRKFVNDWKTWKKIDYQLFLVRIILEVINMFAAVNYFVL 68

Query: 64 STVIMNVYFLIYMVIILP 81
          STV +    + Y  II P
Sbjct: 69 STVDIFSDIIPYEFIITP 86


>Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical protein
            Y37A1B.1a protein.
          Length = 1222

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 113  DRVKYINQTALDPVNIAKLIKESDGQNDE--ETVSRILKAFKEISKAYKIVEK 163
            D V  IN +A++ V   KL+K+ + + DE   TVS  L   +++ +A   ++K
Sbjct: 1039 DGVVIINGSAVNVVQKMKLLKQVEKERDEAKSTVSEQLSLIEQLREAKAEIDK 1091


>AY551964-1|AAS65428.1|  795|Caenorhabditis elegans enhancer of
           polycomb protein.
          Length = 795

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/37 (32%), Positives = 23/37 (62%)

Query: 130 KLIKESDGQNDEETVSRILKAFKEISKAYKIVEKTFR 166
           K+    + +NDE++  +ILK   ++SKA ++ + T R
Sbjct: 230 KMQTRKNRKNDEDSYEKILKLVHDMSKAQQLFDMTAR 266


>AL132904-22|CAC35840.2|  795|Caenorhabditis elegans Hypothetical
           protein Y111B2A.11 protein.
          Length = 795

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/37 (32%), Positives = 23/37 (62%)

Query: 130 KLIKESDGQNDEETVSRILKAFKEISKAYKIVEKTFR 166
           K+    + +NDE++  +ILK   ++SKA ++ + T R
Sbjct: 230 KMQTRKNRKNDEDSYEKILKLVHDMSKAQQLFDMTAR 266


>AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical
            protein Y37A1B.1a protein.
          Length = 1222

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 113  DRVKYINQTALDPVNIAKLIKESDGQNDE--ETVSRILKAFKEISKAYKIVEK 163
            D V  IN +A++ V   KL+K+ + + DE   TVS  L   +++ +A   ++K
Sbjct: 1039 DGVVIINGSAVNVVQKMKLLKQVEKERDEAKSTVSEQLSLIEQLREAKAEIDK 1091


>AF098989-3|AAK18953.2|  569|Caenorhabditis elegans Hypothetical
           protein F47G6.2 protein.
          Length = 569

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 84  EKWVPFANIGIMNEDLEAITFVSVLYMLYDRVKYINQTALDPVNIAKLIKESDGQNDEET 143
           EKWV   +IG M+E+       S   ++YD+    N   ++  N+ +L+ ++D     + 
Sbjct: 440 EKWVDTGDIGRMDENGAIEVVASEDDLIYDK----NNCLVEHWNLERLLNQNDLIKGVQV 495

Query: 144 VSR 146
           VSR
Sbjct: 496 VSR 498


>AC025727-1|AAG23391.3|  429|Caenorhabditis elegans Hypothetical
           protein Y73E7A.3 protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 211 NLAVRNCENDIVRCHLKNIYR-----IIDTEIEPMTVFGLFYINNVPLDLISLTATYTVV 265
           +LA +N EN +V    K  +R     IID E   M V    Y N   + L+      TV+
Sbjct: 110 SLACKNDENGLVVVLRKRGWRYLILAIIDVEANYMIVKAYQYTNLTSVQLLDCATIPTVL 169

Query: 266 LLQFAFL 272
            L + FL
Sbjct: 170 FLSWLFL 176


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.329    0.142    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,146,537
Number of Sequences: 27539
Number of extensions: 248157
Number of successful extensions: 1030
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1027
Number of HSP's gapped (non-prelim): 8
length of query: 272
length of database: 12,573,161
effective HSP length: 80
effective length of query: 192
effective length of database: 10,370,041
effective search space: 1991047872
effective search space used: 1991047872
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 59 (27.9 bits)