GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001066-TA|BGIBMGA001066-PA|IPR000215|Proteinase
inhibitor I4, serpin
         (157 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    27   1.7  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   2.3  
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    26   3.0  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   4.0  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   4.0  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    25   5.3  
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    25   5.3  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.0  

>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 39  PRMKIKTTIDWIKPLRQLGVNQIFNETTSNFESILKSNSIIKNMFV 84
           PR  + T     KP     +N +F    S FE IL SN +++N+ +
Sbjct: 62  PRYAMPTMFYPNKPTPGWPLNYVFGNERSRFEKIL-SNFVLRNLML 106


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 40 RMKIKTTIDWIKPLRQL-GVNQIFNETTSNFESIL 73
          ++K+KT + W+ PL  L    Q  +++TSN+ SI+
Sbjct: 43 KLKLKTDL-WVMPLLCLISAFQYMDKSTSNYSSIM 76


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 12  LEKLAKESNFVKNIKKMMTRTRMRIG-LPRMKIKTTIDW 49
           ++K+A ES+F+K++KK   R+R  I  +P  ++   + W
Sbjct: 95  IDKVA-ESDFLKHLKKYNLRSRCSIAKIPSEELSIKVIW 132


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 12/66 (18%)

Query: 15  LAKESN-FVKNIKKMMTRTRMRIGLPRMKIKTTIDWIKPLRQLGVNQIFNETTSNFESIL 73
           L KE+  FVK   K ++R  ++IG+P       IDW        V   +NE    F S+L
Sbjct: 228 LTKEARYFVKEQHKKLSRKPIKIGIP-------IDWNVSETHPNVLDKWNE----FISLL 276

Query: 74  KSNSII 79
           KSN  +
Sbjct: 277 KSNGYL 282


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 21/110 (19%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 53  LRQLGVNQIF-NETTSNFESILKSNSIIKNMFVNKVKQKLFLELDEMGVSRHRSPL---- 107
           +R LG+ ++F N+   + +   KS  ++K+  ++ ++   + ++++   + +  P+    
Sbjct: 260 IRLLGIRRVFENDPEIDAQFTTKSQQLLKSYHLSILEVDPYFQVNDPITATNDDPVLQKY 319

Query: 108 ----DPEMMSQDRVMLGPGINVLEFILDRPFYFMVTLSLENVQHDLFNGV 153
               D     +  + L   ++++      PF FMV   LE  + D  N V
Sbjct: 320 NLAYDNLEQCRHELELYLVLSIILLSFANPFQFMVFKDLEQAELDRLNAV 369


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 61  IFNETTSNFESILKSNSIIKNMFVNKVKQKLFLELDEMGVSRHRSPL 107
           +F     N  ++LK  SI  N+  N V + L  ++  +   RH S L
Sbjct: 48  VFTFDKKNLSTLLKRGSIDSNLKTNYVLELLRKDVSSLSRLRHPSLL 94


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 107 LDPEMMSQDRVMLGPGINVLEFILDRPFYFMVT 139
           LDPE+    R +LG      E + D PFYF+++
Sbjct: 388 LDPEVYGTKRRILGMLALADEELPDVPFYFVLS 420


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 44  KTTIDWIKPLRQLGVNQIFNETTSNFESILKSNSIIKNMFVNKVKQKLFLELDE 97
           K TI++    + LGV + +    +N   ILK++S++   F + ++  LF  LDE
Sbjct: 467 KNTIEF--DAKFLGVVERYQNQYANNCKILKTSSVLPIPFAHAIESLLF-SLDE 517


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.139    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 692,319
Number of Sequences: 5004
Number of extensions: 25850
Number of successful extensions: 64
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 8
length of query: 157
length of database: 2,362,478
effective HSP length: 67
effective length of query: 90
effective length of database: 2,027,210
effective search space: 182448900
effective search space used: 182448900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 50 (24.2 bits)