GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001066-TA|BGIBMGA001066-PA|IPR000215|Proteinase
inhibitor I4, serpin
         (157 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45220.1 68416.m04880 serpin, putative / serine protease inhi...    51   4e-07
At2g25240.1 68415.m03020 serpin, putative / serine protease inhi...    46   9e-06
At2g26390.1 68415.m03167 serpin, putative / serine protease inhi...    44   6e-05
At1g47710.1 68414.m05302 serpin, putative / serine protease inhi...    43   8e-05
At2g35580.1 68415.m04357 serpin family protein / serine protease...    34   0.038
At2g17550.1 68415.m02031 expressed protein                             31   0.27 
At1g64010.1 68414.m07250 serpin, putative / serine protease inhi...    31   0.27 
At5g14520.1 68418.m01702 pescadillo-related similar to pescadill...    30   0.83 
At3g61320.1 68416.m06862 expressed protein contains Pfam PF05249...    29   1.1  
At1g64030.1 68414.m07252 serpin family protein / serine protease...    28   2.5  
At1g17270.1 68414.m02103 expressed protein                             27   4.4  
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun...    27   5.8  

>At3g45220.1 68416.m04880 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 393

 Score = 50.8 bits (116), Expect = 4e-07
 Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 12/142 (8%)

Query: 1   MPDDQKGLPGLLEKLAKESNFVKNIKKMMTRTRMRIGLPRMKIKTTIDWIKPLRQLGVNQ 60
           +P+D+ GLP LLE+++ +  F+ N             +P+ K          L+++G+  
Sbjct: 240 LPNDRDGLPTLLEEISSKPRFLDNHIPRQRILTEAFKIPKFKFSFEFKASDVLKEMGLTL 299

Query: 61  IF--NETTSNFE--SILKSNSIIKNMFVNKVKQKLFLELDEMGVSRHRSPLDPEMMSQDR 116
            F     T   E  SI ++  + +N+FV+ V  K  +E+DE G     + +    M++D 
Sbjct: 300 PFTHGSLTEMVESPSIPENLCVAENLFVSNVFHKACIEVDEEGT--EAAAVSVASMTKDM 357

Query: 117 VMLGPGINVLEFILDRPFYFMV 138
           +++G      +F+ D PF F V
Sbjct: 358 LLMG------DFVADHPFLFTV 373


>At2g25240.1 68415.m03020 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 324

 Score = 46.4 bits (105), Expect = 9e-06
 Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 8/138 (5%)

Query: 1   MPDDQKGLPGLLEKLAKESNFVKNIKKMMTRTRMRIGLPRMKIKTTIDWIKPLRQLGVNQ 60
           +P+D++GL  LLEK+  E +F  N   +   +     +P+ K     +  + L+ +G+  
Sbjct: 175 LPNDKEGLAPLLEKIGSEPSFFDNHIPLHCISVGAFRIPKFKFSFEFNASEVLKDMGLTS 234

Query: 61  IFNETTSNFESILKSNSIIKNMFVNKVKQKLFLELDEMGVSRHRSPLDPEMMSQDRVMLG 120
            FN        ++ S S   +++V+ +  K  +E+DE G     + +   ++S       
Sbjct: 235 PFN-NGGGLTEMVDSPSNGDDLYVSSILHKACIEVDEEGT--EAAAVSVGVVSCTSFRRN 291

Query: 121 PGINVLEFILDRPFYFMV 138
           P     +F+ DRPF F V
Sbjct: 292 P-----DFVADRPFLFTV 304


>At2g26390.1 68415.m03167 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 389

 Score = 43.6 bits (98), Expect = 6e-05
 Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 8/138 (5%)

Query: 1   MPDDQKGLPGLLEKLAKESNFVKNIKKMMTRTRMRIGLPRMKIKTTIDWIKPLRQLGVNQ 60
           +P+D+ GL  LLEK++ E  F+ +   +       + +P++         + L+ +G+  
Sbjct: 240 LPNDKDGLAALLEKISTEPGFLDSHIPLHRTPVDALRIPKLNFSFEFKASEVLKDMGLTS 299

Query: 61  IFNETTSNFESILKSNSIIKNMFVNKVKQKLFLELDEMGVSRHRSPLDPEMMSQDRVMLG 120
            F  +  N   ++ S S    + V+ +  K  +E+DE G     + +   +M    +M  
Sbjct: 300 PFT-SKGNLTEMVDSPSNGDKLHVSSIIHKACIEVDEEGT--EAAAVSVAIMMPQCLMRN 356

Query: 121 PGINVLEFILDRPFYFMV 138
           P     +F+ D PF F V
Sbjct: 357 P-----DFVADHPFLFTV 369


>At1g47710.1 68414.m05302 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 391

 Score = 43.2 bits (97), Expect = 8e-05
 Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 7/146 (4%)

Query: 1   MPDDQKGLPGLLEKLAKESNFVKN-IKKMMTRTRMRIGLPRMKIKTTIDWIKPLRQLGVN 59
           +PD   GL  LL+K+     F+ N I +   + R    +P+ K     D    L+ LG+ 
Sbjct: 240 LPDANNGLSDLLDKIVSTPGFLDNHIPRRQVKVR-EFKIPKFKFSFGFDASNVLKGLGLT 298

Query: 60  QIFNETTSNFESILKSNSIIKNMFVNKVKQKLFLELDEMGVSRHRSPLDPEMMSQDRVML 119
             F+        +++S  + KN+ V+ +  K  +E++E G     +     ++    +++
Sbjct: 299 SPFS-GEEGLTEMVESPEMGKNLCVSNIFHKACIEVNEEGT--EAAAASAGVIKLRGLLM 355

Query: 120 GPGINVLEFILDRPFYFMVTLSLENV 145
               + ++F+ D PF  +VT ++  V
Sbjct: 356 EE--DEIDFVADHPFLLVVTENITGV 379


>At2g35580.1 68415.m04357 serpin family protein / serine protease
           inhibitor family protein similar to protein zx [Hordeum
           vulgare subsp. vulgare] GI:19071, serpin [Triticum
           aestivum] GI:1885350; contains Pfam profile PF00079:
           Serpin (serine protease inhibitor)
          Length = 374

 Score = 34.3 bits (75), Expect = 0.038
 Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 1   MPDDQKGLPGLLEKLAKESNFVKNIKKMMTRTRM--RIGLPRMKIKTTIDWIKPLRQLGV 58
           +PD++ GLP +LE+LA    F+K+ + + + + +   + +PR K     +  + L+  G+
Sbjct: 242 LPDEKDGLPSMLERLASTRGFLKDNEVLPSHSAVIKELKIPRFKFDFAFEASEALKGFGL 301


>At2g17550.1 68415.m02031 expressed protein
          Length = 765

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 11  LLEKLAKESNFVKNIKKMMTRTRMRIGLPRMKIKTTIDWIKPLRQLGVNQIFNE 64
           ++E+L+K SN  +N   ++ +      LP   +K++  WI P RQ  VN+  +E
Sbjct: 79  IIEELSKRSNDKQNTPSLVAKLMGMDALPLESVKSSSAWIYP-RQSKVNRFDDE 131


>At1g64010.1 68414.m07250 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 185

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 15/61 (24%), Positives = 31/61 (50%)

Query: 1   MPDDQKGLPGLLEKLAKESNFVKNIKKMMTRTRMRIGLPRMKIKTTIDWIKPLRQLGVNQ 60
           +PD++ GL  L+EK+A    F+ +            G+P+ KI+      +   +LG+++
Sbjct: 57  LPDEKDGLDNLVEKMASSVGFLDSHIPSQKVKVGEFGIPKFKIEFGFSASRAFNRLGLDE 116

Query: 61  I 61
           +
Sbjct: 117 M 117


>At5g14520.1 68418.m01702 pescadillo-related similar to pescadillo
           [Zebrafish, Danio rerio] SWISS-PROT:P79741
          Length = 590

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 6/119 (5%)

Query: 1   MPDDQKGLPGLLEKLAKESNFVKNIKKMMTRTRMRIGLPRMKIKTTIDWIKPLRQLGVNQ 60
           + D Q  L   +   A+E+   KN KKM  + +      +M+I  + D + P+   G  +
Sbjct: 471 LEDPQNLLYAGVMSRAEEAEAAKNKKKMAAQEKQYHEELKMEINGSKDVVAPVLAEGEGE 530

Query: 61  IFNETTSNFESILKSNSIIKNMFVNKVKQKLFLELDEMGVSRHRSPLDPEMMSQDRVML 119
              E+  +   I + ++ +  + +++ K+KL+   D M +S+ R     E++ Q +  L
Sbjct: 531 ---ESVPDAMQIAQEDADMPKVLMSRKKRKLY---DAMKISQSRKRSGVEIIEQRKKRL 583


>At3g61320.1 68416.m06862 expressed protein contains Pfam PF05249:
           Uncharacterised protein family (UPF0187)
          Length = 410

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 51  KPLRQLGVNQIFNETTSNFESILKSNSIIKNMFVNKVKQKLFLELDEMGVSRHRS 105
           +P   L ++++ +   SN +  +KS  +I+N  + K+K     E       RHRS
Sbjct: 359 EPFPMLALDELCDLVHSNIQEAVKSEKVIRNRIIAKIK---LHEFKHSSNGRHRS 410


>At1g64030.1 68414.m07252 serpin family protein / serine protease
           inhibitor family protein similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311, serpin [Triticum
           aestivum] GI:871551; contains Pfam profile PF00079:
           Serpin (serine protease inhibitor)
          Length = 385

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 16/61 (26%), Positives = 28/61 (45%)

Query: 1   MPDDQKGLPGLLEKLAKESNFVKNIKKMMTRTRMRIGLPRMKIKTTIDWIKPLRQLGVNQ 60
           +PD + GL  LLEK+A    F+ +          +  +P+ KI+        L +LG+  
Sbjct: 243 LPDKKDGLDDLLEKMASTPGFLDSHIPTYRDELEKFRIPKFKIEFGFSVTSVLDRLGLRS 302

Query: 61  I 61
           +
Sbjct: 303 M 303


>At1g17270.1 68414.m02103 expressed protein
          Length = 564

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 54  RQLGVNQIFNETTSNFESILKSNSIIKNMFVNKVKQ-KLFLELDEMGVSRHRS 105
           +QL +  + N T  N  + + S+ +I N+    +KQ  +  E++E+ +S HR+
Sbjct: 120 QQLALVSLLNRTNFNSSNAISSSVVIDNVKAALLKQISVNKEIEEVLLSPHRT 172


>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 428

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 39  PRMKIKTTIDWIKPLRQLGVNQIFNETTSNFESILKSN-SIIKNMFVNKVKQKLFL 93
           P M +   + W     Q   N++F +   N   ++ SN  I+++  V  +K + +L
Sbjct: 151 PPMAVTNAVSWRSEGIQYKKNEVFLDVIENVNILVNSNGQIVRSDVVGALKMRTYL 206


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.139    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,449,836
Number of Sequences: 28952
Number of extensions: 124320
Number of successful extensions: 282
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 271
Number of HSP's gapped (non-prelim): 14
length of query: 157
length of database: 12,070,560
effective HSP length: 75
effective length of query: 82
effective length of database: 9,899,160
effective search space: 811731120
effective search space used: 811731120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)