Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001065-TA|BGIBMGA001065-PA|undefined
         (141 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    31   0.051
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    27   1.1  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    26   2.5  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   5.8  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    25   5.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   7.7  

>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 31.5 bits (68), Expect = 0.051
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 48  LHCLITPLQFIAAHDRIINVWGHISPAWQLCI-TW-TTHDTHATFKLSLDSPQTSSSTGD 105
           ++C      F A   +I++V G  +   QL + +W T H  H     +L +P+   STG 
Sbjct: 229 INCQADARSFYAERSKIVHVAGLTNDVTQLELESWFTNHGVHPVALWTLKTPEPYKSTGT 288

Query: 106 NHAAFSS 112
               F+S
Sbjct: 289 GFVLFAS 295


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 6   HNPRILADKSTSLTVVPQQASIAASTGPSQPTHRAS 41
           H P +  DK+     VP +A++  + G S+P   AS
Sbjct: 65  HLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISAS 100


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 17/76 (22%), Positives = 31/76 (40%)

Query: 2   NFGYHNPRILADKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTHLHCLITPLQFIAAH 61
           N     P  LA  ++S ++V Q      + G  + T R        +H L+ P+     H
Sbjct: 559 NTAASRPTNLAAGNSSASIVQQLLECGGTMGQQKMTSRIRELTERVMHSLMRPVPLDLPH 618

Query: 62  DRIINVWGHISPAWQL 77
           D+ + +   I  A+ +
Sbjct: 619 DQKVMIASLIKSAYPM 634


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 30  STGPSQPTHRASWSYGTHLHCLITPLQFIAAHDRIINVWGHISPAWQLCITWTTHDTHAT 89
           S+    PT  +S + G+H     T    ++++     +   ++PA Q  +  +  +  A 
Sbjct: 222 SSNSRLPTDDSSHTVGSHSFTSGTHPPIVSSNSAF-TLPNAVTPAAQAPLIRSVSEYPAN 280

Query: 90  FK---LSLDSPQTSSSTGDNHAAFSSVSTHCKLRAAL 123
                 SL  P+++S+  D H + +S S+H  + + L
Sbjct: 281 VSPPAQSLQLPKSTSNPADLHLSIASASSHKNIFSGL 317


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 37  THRASWSYGTHLHCLITPLQFIAAHDRIINVWGH 70
           +H   +    + H  + PL+ I A+D   N+WG+
Sbjct: 288 SHMVFYHPQVYKHVGVVPLKAINAYDFDDNIWGY 321


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 15  STSLTVVPQQASIAASTGPSQPTHRASWSYGTHLHCLITPLQFIAAHDRIINVWGHISPA 74
           ST +T      S ++++ P  PT  +S    T+ + L T          I    G  S +
Sbjct: 131 STPITPTVPPTSTSSTSIPIPPTSTSSTD--TNSNPLPTTSTSCTTSTSIPPTGG--SSS 186

Query: 75  WQLCITWTTHDTHATFKLSLDSPQTS-SSTGDNHAAFSSVSTHCKLRAALAT 125
               IT T   T +T   S+  P TS SST  N +   + ST C    ++ T
Sbjct: 187 LSTPITPTVPPT-STSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPT 237


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.126    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 624,824
Number of Sequences: 5004
Number of extensions: 22909
Number of successful extensions: 64
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 58
Number of HSP's gapped (non-prelim): 11
length of query: 141
length of database: 2,362,478
effective HSP length: 66
effective length of query: 75
effective length of database: 2,032,214
effective search space: 152416050
effective search space used: 152416050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)