Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001065-TA|BGIBMGA001065-PA|undefined
         (141 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.48 
SB_20355| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.83 
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)                28   2.5  
SB_25971| Best HMM Match : Sushi (HMM E-Value=0.54)                    28   3.4  
SB_13509| Best HMM Match : Acylphosphatase (HMM E-Value=1.6)           27   4.4  
SB_36084| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_6544| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.7  

>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4482

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 58   IAAHDRIINV-WGHISPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTH 116
            + A D + NV W       +  +T   H+THA  +L  DSP  +S  G +  A   + + 
Sbjct: 3634 LVAVDALGNVMWDSGKYKTKARVTIPCHNTHAWAELPTDSPTITSVHGLDFEAEGELRSL 3693

Query: 117  CKLRAAL 123
            C+ +AAL
Sbjct: 3694 CQEKAAL 3700


>SB_20355| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 60  AHDRIINVWGHISPAWQLCI-TWTT-HDTHATFKLSLDSPQTSSSTGDN 106
           A D +IN W  ++ AW   I TW T  +T  T   + D+      TG N
Sbjct: 70  AWDTVINTWDTVTNAWDTVINTWDTGTNTRDTVTNARDAVTNMRDTGTN 118


>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
          Length = 1188

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/17 (64%), Positives = 12/17 (70%)

Query: 22  PQQASIAASTGPSQPTH 38
           PQ AS+  S G SQPTH
Sbjct: 548 PQHASVGTSMGQSQPTH 564


>SB_25971| Best HMM Match : Sushi (HMM E-Value=0.54)
          Length = 275

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 3/129 (2%)

Query: 1   MNFGYHNPRILADKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTHLHCLITPLQFIAA 60
           M + Y +  + +    + TV P   ++A  +G  Q   +   +  TH  CL      I+A
Sbjct: 28  MTYHYCSEVVASGAVFNRTVAPLPGTVAQVSGICQGMTQPFSNSSTHAQCLSDGRWNISA 87

Query: 61  HDRIINVWGHISPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHCKLR 120
                   G+  P  +LC    +H +    ++S  +  TS + G +   F  V+    +R
Sbjct: 88  EVTCQCQAGY-QPVSRLC-EGLSHGSRYVLRVSSRNGVTSFADG-SAIRFIEVNVTLPIR 144

Query: 121 AALATRTQH 129
            AL  RT +
Sbjct: 145 EALKVRTTY 153


>SB_13509| Best HMM Match : Acylphosphatase (HMM E-Value=1.6)
          Length = 166

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 58  IAAHDRIINV-WGHISPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTH 116
           + A D + NV W       +  +T   H+ HA  KL  + P  +S  G +  A   + + 
Sbjct: 34  LVAVDALGNVLWDSGKYKTKARVTTPCHNNHAWAKLPTEPPAITSVHGIDFEAEGELRSL 93

Query: 117 CKLRAAL 123
           C+ +AAL
Sbjct: 94  CQEKAAL 100


>SB_36084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 751

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 2   NFGYHNPRILA-DKSTSLTVVPQQASIAASTGPSQPTHR 39
           NF   +PR +A D S+++ V P   S +     S P HR
Sbjct: 469 NFSISSPRTVALDSSSTMNVSPNSDSSSRQPVASDPNHR 507


>SB_6544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 43  SYGTHLHCL-ITPLQFIAA-HD-RIINVWGHISPAWQLCITWTTHDTHATFKLSLDSPQT 99
           S  T LH L IT  +++A  H  R  N+       W +  TW    T A  +L+ ++P  
Sbjct: 174 SISTVLHLLAITTDRYMAIMHSLRYYNIVTRHRGCWVIACTWLISTTTAFIQLAWNNPSV 233

Query: 100 SSSTGD 105
             +T D
Sbjct: 234 LDNTHD 239


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.126    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,761,131
Number of Sequences: 59808
Number of extensions: 177055
Number of successful extensions: 411
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 407
Number of HSP's gapped (non-prelim): 8
length of query: 141
length of database: 16,821,457
effective HSP length: 75
effective length of query: 66
effective length of database: 12,335,857
effective search space: 814166562
effective search space used: 814166562
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)