Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001065-TA|BGIBMGA001065-PA|undefined
         (141 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC028026-1|AAH28026.1|   96|Homo sapiens PCGF3 protein protein.        29   4.3  
U59464-1|AAC50550.1| 1447|Homo sapiens PATCHED protein.                29   7.5  
U43148-1|AAC50496.1| 1296|Homo sapiens PTC protein.                    29   7.5  
AY395768-1|AAR21239.1|  651|Homo sapiens patched protein.              29   7.5  
AL161729-2|CAH73818.1| 1296|Homo sapiens patched homolog 1 (Dros...    29   7.5  
AL161729-1|CAH73817.1| 1447|Homo sapiens patched homolog 1 (Dros...    29   7.5  
AB209495-1|BAD92732.1|  586|Homo sapiens patched variant protein.      29   7.5  

>BC028026-1|AAH28026.1|   96|Homo sapiens PCGF3 protein protein.
          Length = 96

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 10/16 (62%), Positives = 13/16 (81%), Gaps = 1/16 (6%)

Query: 67 VWGHISPAWQLCITWT 82
          +WGH+SPAW L + WT
Sbjct: 6  LWGHLSPAWVL-VPWT 20


>U59464-1|AAC50550.1| 1447|Homo sapiens PATCHED protein.
          Length = 1447

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 92  LSLDSPQTSSSTGDNHAAFSSVSTHC 117
           LS  SP+++SST D  + FS  S HC
Sbjct: 697 LSCQSPESTSSTRDLLSQFSDSSLHC 722


>U43148-1|AAC50496.1| 1296|Homo sapiens PTC protein.
          Length = 1296

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 92  LSLDSPQTSSSTGDNHAAFSSVSTHC 117
           LS  SP+++SST D  + FS  S HC
Sbjct: 546 LSCQSPESTSSTRDLLSQFSDSSLHC 571


>AY395768-1|AAR21239.1|  651|Homo sapiens patched protein.
          Length = 651

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 92  LSLDSPQTSSSTGDNHAAFSSVSTHC 117
           LS  SP+++SST D  + FS  S HC
Sbjct: 292 LSCQSPESTSSTRDLLSQFSDSSLHC 317


>AL161729-2|CAH73818.1| 1296|Homo sapiens patched homolog 1
           (Drosophila) protein.
          Length = 1296

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 92  LSLDSPQTSSSTGDNHAAFSSVSTHC 117
           LS  SP+++SST D  + FS  S HC
Sbjct: 546 LSCQSPESTSSTRDLLSQFSDSSLHC 571


>AL161729-1|CAH73817.1| 1447|Homo sapiens patched homolog 1
           (Drosophila) protein.
          Length = 1447

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 92  LSLDSPQTSSSTGDNHAAFSSVSTHC 117
           LS  SP+++SST D  + FS  S HC
Sbjct: 697 LSCQSPESTSSTRDLLSQFSDSSLHC 722


>AB209495-1|BAD92732.1|  586|Homo sapiens patched variant protein.
          Length = 586

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 92  LSLDSPQTSSSTGDNHAAFSSVSTHC 117
           LS  SP+++SST D  + FS  S HC
Sbjct: 133 LSCQSPESTSSTRDLLSQFSDSSLHC 158


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.319    0.126    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,265,992
Number of Sequences: 224733
Number of extensions: 833236
Number of successful extensions: 1798
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1792
Number of HSP's gapped (non-prelim): 7
length of query: 141
length of database: 73,234,838
effective HSP length: 83
effective length of query: 58
effective length of database: 54,581,999
effective search space: 3165755942
effective search space used: 3165755942
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)