Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001065-TA|BGIBMGA001065-PA|undefined
(141 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0024 + 163588-163897,164303-164406 29 1.4
06_03_1377 - 29692895-29692899,29700435-29702190 29 1.4
07_03_1763 - 29316969-29318120 29 1.9
01_05_0461 + 22446797-22447050,22447171-22447288,22447895-224482... 29 1.9
12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561 28 2.5
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 28 3.3
03_05_0026 + 19966616-19966703,19967992-19968058,19968599-199686... 28 3.3
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 27 4.3
10_08_0269 - 16366392-16366403,16366469-16368262 27 7.5
05_02_0037 + 5883285-5884292 27 7.5
>11_01_0024 + 163588-163897,164303-164406
Length = 137
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 15 STSLTVVPQQA---SIAASTGPSQPTHRASWSYGTHLHCLITPLQFIAAHDRII 65
ST T P A ++A ST P+ PTH WS TH H L+ I +R++
Sbjct: 66 STHATTTPPPAGTMTVAPST-PNAPTHHGRWSRQTH-HPHEKDLERIEKSNRVL 117
>06_03_1377 - 29692895-29692899,29700435-29702190
Length = 586
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 60 AHDRIINVWGHISPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHC 117
+H+R+ + A ++ T H H +S D S++ H A SS+ST C
Sbjct: 439 SHERLTISHEKLKEAHDNLLSTTQHGAHIDVGISCDLLDDSATCHIAHVASSSISTSC 496
>07_03_1763 - 29316969-29318120
Length = 383
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 79 ITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHCKLR 120
+++ H TF +S+ S S G N FS + HC+ R
Sbjct: 190 VSYAVHPDQRTFFVSVKEAFCSRSDGGNKGTFSFDTKHCEWR 231
>01_05_0461 +
22446797-22447050,22447171-22447288,22447895-22448217,
22448908-22449056,22449324-22449463,22449606-22449757,
22449862-22450021,22450071-22450088
Length = 437
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 28 AASTGPSQPTHRASWSYGTHLHCLITPLQFIAAHDRIINVWGHISPAWQ 76
A+STG +P +W+ G+ L L F AA+ ++ + + WQ
Sbjct: 26 ASSTGEERPDLPWAWALGSERRVLALALAFRAANALLVRTYFNPDEHWQ 74
>12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561
Length = 495
Score = 28.3 bits (60), Expect = 2.5
Identities = 16/58 (27%), Positives = 25/58 (43%)
Query: 60 AHDRIINVWGHISPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHC 117
+H+R+ + A ++ T H H +S D S+ H A SS+ST C
Sbjct: 372 SHERLTISHEKLKEAHDNLLSTTQHGAHIDAGISCDLLDDSAICHVAHVALSSISTSC 429
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 27.9 bits (59), Expect = 3.3
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 11 LADKSTSLTVVPQQASIA-ASTGPSQPTHRASW 42
LAD T P+ SI AST PSQ H A W
Sbjct: 1036 LADFVAEWTPAPETVSIPEASTDPSQLPHTAHW 1068
>03_05_0026 +
19966616-19966703,19967992-19968058,19968599-19968677,
19969140-19969231,19969961-19970396,19973749-19974099
Length = 370
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 79 ITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHC 117
++ T H H +S D S+S H A SS+ST C
Sbjct: 282 LSTTQHGAHIDVGISCDLLDDSASCHIPHVASSSISTSC 320
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 27.5 bits (58), Expect = 4.3
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 10 ILADK-STSLTVVPQQASIAASTGPSQPTHRASWSYGTHLHCLITPLQFIAAHDRIINVW 68
+L +K TS VVP +++ A+ +S S T C IT ++ H R++NV+
Sbjct: 3170 VLCEKLQTSQAVVPSDSNVTATEVKELAGSSSSPSLKTGGVCNITFVRVAEKHRRLLNVF 3229
Query: 69 GHISPA 74
+P+
Sbjct: 3230 IRQNPS 3235
>10_08_0269 - 16366392-16366403,16366469-16368262
Length = 601
Score = 26.6 bits (56), Expect = 7.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 79 ITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHC 117
++ T H H +S D S++ H A SS+ST C
Sbjct: 458 LSTTQHGAHIDVGISCDLLDDSATCHIAHVASSSISTSC 496
>05_02_0037 + 5883285-5884292
Length = 335
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 93 SLDSPQTSSSTGDNHAAFSSVSTHCK 118
SL SP +S+S+ HAA S S C+
Sbjct: 47 SLSSPSSSTSSRSYHAAMSGKSLSCE 72
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.126 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,106,548
Number of Sequences: 37544
Number of extensions: 156029
Number of successful extensions: 382
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 10
length of query: 141
length of database: 14,793,348
effective HSP length: 75
effective length of query: 66
effective length of database: 11,977,548
effective search space: 790518168
effective search space used: 790518168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
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