GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001065-TA|BGIBMGA001065-PA|undefined
         (141 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024214-18|AAF36083.1|  211|Caenorhabditis elegans Nuclear pore...    32   0.18 
AC024214-17|AAF36082.1|  313|Caenorhabditis elegans Nuclear pore...    32   0.18 
Z68003-2|CAA91976.2|  560|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AF016657-14|AAB93663.3|  495|Caenorhabditis elegans Hypothetical...    27   3.8  
U41548-1|AAA83205.2|  291|Caenorhabditis elegans Aquaporin or aq...    26   8.7  
AF039050-4|AAC47937.1|  499|Caenorhabditis elegans Cytochrome p4...    26   8.7  

>AC024214-18|AAF36083.1|  211|Caenorhabditis elegans Nuclear pore
           complex protein protein20, isoform b protein.
          Length = 211

 Score = 31.9 bits (69), Expect = 0.18
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 23  QQASIAASTGPSQPTHRASWSYGTHLHCLITPLQFIAAHDRIINVWGHISPAWQLCITWT 82
           Q   +A   G S P  + SW++  +   L +     A++D+ + +W      WQ    W 
Sbjct: 47  QSYPMAELVGHSGPVWKVSWAHPKYGGLLAS-----ASYDKKVIIWNEQQGRWQKAYEWA 101

Query: 83  THDTHAT 89
            H+   T
Sbjct: 102 AHEASTT 108


>AC024214-17|AAF36082.1|  313|Caenorhabditis elegans Nuclear pore
           complex protein protein20, isoform a protein.
          Length = 313

 Score = 31.9 bits (69), Expect = 0.18
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 23  QQASIAASTGPSQPTHRASWSYGTHLHCLITPLQFIAAHDRIINVWGHISPAWQLCITWT 82
           Q   +A   G S P  + SW++  +   L +     A++D+ + +W      WQ    W 
Sbjct: 47  QSYPMAELVGHSGPVWKVSWAHPKYGGLLAS-----ASYDKKVIIWNEQQGRWQKAYEWA 101

Query: 83  THDTHAT 89
            H+   T
Sbjct: 102 AHEASTT 108


>Z68003-2|CAA91976.2|  560|Caenorhabditis elegans Hypothetical
           protein E02H4.2 protein.
          Length = 560

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 13/50 (26%), Positives = 27/50 (54%)

Query: 71  ISPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHCKLR 120
           ++P+  +  T + +  +   + SL  PQT  + GD +  ++S  T+C+ R
Sbjct: 323 LAPSLSIQSTDSFNSAYEDAEESLIQPQTKKNEGDAYGKYNSTLTNCQTR 372


>Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical
           protein F36G3.1 protein.
          Length = 964

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 95  DSPQTSSSTGDNHAAFSSVSTH 116
           D  +TSS+T DN+  FS  STH
Sbjct: 484 DEVETSSTTADNNIPFSDCSTH 505


>AF016657-14|AAB93663.3|  495|Caenorhabditis elegans Hypothetical
           protein C16C4.13 protein.
          Length = 495

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 2   NFGYHNPRILADKSTSLTVVPQQASIAASTGPSQPTHRASW 42
           +FG+H P +  D+ T   VV ++A + A+ G      +  W
Sbjct: 188 SFGFHLPHVSEDR-TKTGVVEREAKLIAANGKFHSVPKRRW 227


>U41548-1|AAA83205.2|  291|Caenorhabditis elegans Aquaporin or
          aquaglyceroporin relatedprotein 7 protein.
          Length = 291

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 55 LQFIAAHDRIINVWGHISPAWQLCITWTTHDTHAT 89
          +QFI +++++ N W +I+  W L I +T +    T
Sbjct: 44 MQFILSNEKL-NTWININLGWGLAIAFTVYTCSKT 77


>AF039050-4|AAC47937.1|  499|Caenorhabditis elegans Cytochrome
          p450 family protein 34A7 protein.
          Length = 499

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 56 QFIAAHDRIINVWGHISPAWQLCITWTTHDTH 87
          QF   + ++  VW    PA Q+C     H+TH
Sbjct: 57 QFRKQYGKVFTVWMGPIPAVQICDFDVAHETH 88


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.126    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,357,051
Number of Sequences: 27539
Number of extensions: 124192
Number of successful extensions: 205
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 200
Number of HSP's gapped (non-prelim): 7
length of query: 141
length of database: 12,573,161
effective HSP length: 75
effective length of query: 66
effective length of database: 10,507,736
effective search space: 693510576
effective search space used: 693510576
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)