GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001065-TA|BGIBMGA001065-PA|undefined
         (141 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   2.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   5.0  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        20   8.7  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 7   NPRILADKSTSLTVVPQQASIAASTGPSQ 35
           NPRI +  S+S +  P     AA+  PS+
Sbjct: 514 NPRIASAPSSSTSSSPPAKGAAAAGQPSK 542


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 28 AASTGPSQPTHRASWSYGTHLHCLITP 54
          A S+  + P H   +S  THL  L +P
Sbjct: 35 AESSASNSPDHYERFSPSTHLMDLSSP 61


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 22 PQQASIAASTGPSQPTHRASWSY 44
          PQ +  +AST P+  T  + + Y
Sbjct: 69 PQHSGSSASTSPAARTTSSMYPY 91


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.126    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,121
Number of Sequences: 429
Number of extensions: 1372
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 141
length of database: 140,377
effective HSP length: 52
effective length of query: 89
effective length of database: 118,069
effective search space: 10508141
effective search space used: 10508141
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)