GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001065-TA|BGIBMGA001065-PA|undefined
         (141 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38560.1 68418.m04662 protein kinase family protein contains ...    28   2.7  
At4g36290.1 68417.m05160 ATP-binding region, ATPase-like domain-...    27   3.6  
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ...    27   6.3  
At2g07360.1 68415.m00843 SH3 domain-containing protein contains ...    26   8.4  
At1g74530.2 68414.m08635 expressed protein                             26   8.4  
At1g74530.1 68414.m08634 expressed protein                             26   8.4  

>At5g38560.1 68418.m04662 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 681

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 7   NPRILADKSTSLTVVPQQASIAASTGPS 34
           +P  LA   T L VVP++  IA  TGP+
Sbjct: 188 DPSTLAPPPTPLPVVPREKPIAKPTGPA 215


>At4g36290.1 68417.m05160 ATP-binding region, ATPase-like
           domain-containing protein low similarity to microrchidia
           [Mus musculus] GI:5410255; contains Pfam profile
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein
          Length = 635

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 3   FGYHNPRILADKSTSLTVVPQQASIAASTGPSQ-PTHRAS 41
           FGY   +I ADKS   TV+P Q     +  PS  P+ R S
Sbjct: 477 FGYQTAQIPADKS-KRTVIPDQPPTVNTYNPSPLPSDRIS 515


>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
            binding domain-containing protein contains Pfam profiles
            PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
            binding domain
          Length = 2176

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 3    FGYHNPRILADKSTSLTVVPQQASIAASTGPSQPTH 38
            F   NPRIL D S SL   P QA +  S  PS   H
Sbjct: 1646 FPDENPRILVDGSISLQ-KPVQADLIGSKVPSPFLH 1680


>At2g07360.1 68415.m00843 SH3 domain-containing protein contains
          Pfam profile PF00018: SH3 domain
          Length = 1196

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 15 STSLTVVPQQA-SIAASTGPSQPTHRASWSYGTHLH 49
          S   T VP Q+ S +AS+  SQPT  AS S  +HLH
Sbjct: 14 SADPTPVPAQSTSSSASSTASQPTS-ASASSSSHLH 48


>At1g74530.2 68414.m08635 expressed protein 
          Length = 262

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 4/48 (8%)

Query: 72  SPAWQLCIT-WTTHDT--HATFKLSL-DSPQTSSSTGDNHAAFSSVST 115
           +P W+  +  WT   T  ++ F++ + +SP TSS + D+  +++  ST
Sbjct: 11  APNWRTAVLFWTISLTIFYSLFQMGIRNSPSTSSPSSDSFVSYAEQST 58


>At1g74530.1 68414.m08634 expressed protein 
          Length = 318

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 4/48 (8%)

Query: 72  SPAWQLCIT-WTTHDT--HATFKLSL-DSPQTSSSTGDNHAAFSSVST 115
           +P W+  +  WT   T  ++ F++ + +SP TSS + D+  +++  ST
Sbjct: 11  APNWRTAVLFWTISLTIFYSLFQMGIRNSPSTSSPSSDSFVSYAEQST 58


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.126    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,224,882
Number of Sequences: 28952
Number of extensions: 118407
Number of successful extensions: 280
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 6
length of query: 141
length of database: 12,070,560
effective HSP length: 74
effective length of query: 67
effective length of database: 9,928,112
effective search space: 665183504
effective search space used: 665183504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)