Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001064-TA|BGIBMGA001064-PA|IPR001173|Glycosyl
transferase, family 2, IPR000772|Ricin B lectin, IPR008997|Ricin
B-related lectin
         (575 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    25   1.1  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   1.9  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   1.9  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    25   1.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   4.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   4.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   4.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   4.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   4.4  

>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
          protein 10 protein.
          Length = 129

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 85 LSRSLPDIRHSGCKK 99
          L ++LPD  HSGC K
Sbjct: 63 LKKALPDALHSGCSK 77


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
          transcription factor Maxillopediaprotein.
          Length = 523

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 7/40 (17%)

Query: 43 ERKRVGIGEQGLPAHLPKEESDLEESLYSVNGFNGALSDK 82
          + KR  +G+QG       ++ D ++S+ S  G NG LSDK
Sbjct: 58 KHKRQTLGKQG-------DDGDDKDSITSDGGKNGKLSDK 90


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
          ortholog protein.
          Length = 471

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 7/40 (17%)

Query: 43 ERKRVGIGEQGLPAHLPKEESDLEESLYSVNGFNGALSDK 82
          + KR  +G+QG       ++ D ++S+ S  G NG LSDK
Sbjct: 6  KHKRQTLGKQG-------DDGDDKDSITSDGGKNGKLSDK 38


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 7/40 (17%)

Query: 43  ERKRVGIGEQGLPAHLPKEESDLEESLYSVNGFNGALSDK 82
           + KR  +G+QG       ++ D ++S+ S  G NG LSDK
Sbjct: 189 KHKRQTLGKQG-------DDGDDKDSITSDGGKNGKLSDK 221


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 290  FWELGGYDPGLDIWGGEQYELSFKIWQCGGRMLDA 324
            +W   G DPG  + G   Y  SF +     R L+A
Sbjct: 2548 YWIEKGADPGKIVMGMPLYGQSFSLADAADRGLNA 2582


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 6   AVLHAPPDLNKAVNKENHFVPKSLKKI 32
           A  HAP   N+  N+   +VP ++  I
Sbjct: 862 AYTHAPEGFNEFYNQRRRWVPSTIANI 888


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 6   AVLHAPPDLNKAVNKENHFVPKSLKKI 32
           A  HAP   N+  N+   +VP ++  I
Sbjct: 862 AYTHAPEGFNEFYNQRRRWVPSTIANI 888


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 6   AVLHAPPDLNKAVNKENHFVPKSLKKI 32
           A  HAP   N+  N+   +VP ++  I
Sbjct: 862 AYTHAPEGFNEFYNQRRRWVPSTIANI 888


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 6   AVLHAPPDLNKAVNKENHFVPKSLKKI 32
           A  HAP   N+  N+   +VP ++  I
Sbjct: 862 AYTHAPEGFNEFYNQRRRWVPSTIANI 888


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.138    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,767
Number of Sequences: 317
Number of extensions: 6621
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 9
length of query: 575
length of database: 114,650
effective HSP length: 60
effective length of query: 515
effective length of database: 95,630
effective search space: 49249450
effective search space used: 49249450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)