Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001064-TA|BGIBMGA001064-PA|IPR001173|Glycosyl
transferase, family 2, IPR000772|Ricin B lectin, IPR008997|Ricin
B-related lectin
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal...    36   0.015
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    28   3.1  
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    28   4.1  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    27   9.4  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   9.4  
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    27   9.4  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   9.4  
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    27   9.4  

>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
           catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 35.9 bits (79), Expect = 0.015
 Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 4/108 (3%)

Query: 110 SVVVPFHNEHWSTLLRTAYSVLYRSPEHLIKEIFLVDDASTKDFLGKALDDYLEGNMPKV 169
           SV++P +NE  +  + T         E L  EI ++DDAS       A +  L+    + 
Sbjct: 5   SVLLPTYNERKNLPIITYLIAKTFDQEKLDWEIVIIDDASPDGTQEVAKE--LQKIYGED 62

Query: 170 KVIRLPK--RSGLITARLAGAERATADVLIFLDSHTEANVNWLPPLLE 215
           K++  P+  + GL TA + G + AT D +I +D+    +  +LP  ++
Sbjct: 63  KILLKPRSGKLGLGTAYIHGLKFATGDFVIIMDADFSHHPKYLPEFIK 110


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 286 SRAFFWELGGYDPGLDIWGGEQYELSF 312
           SR+  +++GGY  GL IW G    LS+
Sbjct: 528 SRSLQFKIGGYSVGLQIWLGVHGPLSY 554


>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 1/80 (1%)

Query: 10  APPDLNKAVNKENHFVPKSLKKIDWHNYEQISSERKRVGIGEQGLPAHLPKEESDLEESL 69
           AP +  +  +  N   P ++   + + +  +  E   + I     P    KE  DL+ +L
Sbjct: 230 APEEETRKADVTNSLDPANVLSTELNTWHVMPKEAWLIDISMSSQPISSLKEHPDLKPTL 289

Query: 70  YSVNGFNGALSDKIPLSRSL 89
           Y ++  N +   K+  SRSL
Sbjct: 290 Y-IHDVNVSYMLKLKASRSL 308


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7   VLHAPPDLNKAVNKENHFVPKSLKKIDWH--NYE-QISSERKRVGIGEQG 53
           V+   PD  + +NKE   + K      W   NY+ QI  E +R+  G QG
Sbjct: 857 VVKESPDNEEELNKEYEGIEKGHDIFSWRNLNYDIQIKGEHRRLLNGVQG 906


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 350 KNYRRVAEVWMDEYAEHLYRRRPHYRRIDPGD-----LAPQKRLREKLNCK 395
           KN+  + E  M+ Y+ +L+  R HY   D  D     L+    LR+K +CK
Sbjct: 350 KNFSNIVEGSMEVYSAYLHIIRDHYNLSDLADVQAIFLSRFILLRKKEDCK 400


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 321 MLDAPCSRVGHIYRKFAPFPNPGHGDF 347
           +LDAPCS  G IY+  +   N    DF
Sbjct: 414 LLDAPCSGTGVIYKDQSVKTNKSERDF 440


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 55  PAHLPKEESDLEESLYSVNGFNGALSDKIPLSRSLPDI-RHSGCKKKMYIESLPSVSVVV 113
           P    KE+S  + +L S + F+ AL    PL   + D   HS   K   + S P ++   
Sbjct: 20  PFSTKKEKSTFQNNLISSDVFSSALKPLSPLKSLVADFSTHSNPSKDNQLISPPKIN-HR 78

Query: 114 PFHNEHWSTLLRTAY 128
            F NE   +  +T Y
Sbjct: 79  EFLNEEKESDTQTRY 93


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 39  QISSERKRVGIGEQGLPAHLPKEESDLEESLYSVNGFNGALSDKIPLSRSLPDIRH 94
           ++S+ R+ V  G +G P ++  + S + E    V G NG+++    L+    DI H
Sbjct: 287 EVSAAREEVP-GRRGYPGYMYTDLSTIYERAGRVEGRNGSITQIPILTMPNDDITH 341


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.138    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,553
Number of Sequences: 5004
Number of extensions: 131894
Number of successful extensions: 245
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 9
length of query: 575
length of database: 2,362,478
effective HSP length: 77
effective length of query: 498
effective length of database: 1,977,170
effective search space: 984630660
effective search space used: 984630660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)