Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001064-TA|BGIBMGA001064-PA|IPR001173|Glycosyl
transferase, family 2, IPR000772|Ricin B lectin, IPR008997|Ricin
B-related lectin
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0331 + 2331774-2331985,2332825-2332952,2333392-2333452,233...    31   3.3  
07_01_0073 - 536110-536272,536402-536547,536647-536715                 30   5.8  
01_01_0860 - 6705087-6705490,6706900-6708573,6709714-6709801           29   7.6  

>02_01_0331 +
           2331774-2331985,2332825-2332952,2333392-2333452,
           2333878-2334035,2335001-2335083,2336364-2336468,
           2336659-2336756,2337136-2337256,2337366-2337416,
           2337987-2338179,2338277-2338845,2338964-2339017,
           2339250-2339412,2340155-2340417,2340530-2340717,
           2341875-2341945,2342021-2342309,2343962-2344027,
           2344186-2344303,2344468-2344575,2344656-2344805,
           2344892-2345065,2345161-2345232
          Length = 1164

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 14/64 (21%), Positives = 29/64 (45%)

Query: 469 WHKDIRCKTRNMCWDLPDSSPGSPIVLYACHLGGGNQLWRYYPDTKQIKHGGHSNCVDHE 528
           W    R K      D+  ++     +L+  HL G  ++W  +  TK + +   SN ++ +
Sbjct: 129 WSLVSRTKAVGPVQDIVTATVNERELLFVLHLDGSLRIWDIFNHTKLLSYNVRSNDIEGQ 188

Query: 529 PTTL 532
           P+ +
Sbjct: 189 PSRI 192


>07_01_0073 - 536110-536272,536402-536547,536647-536715
          Length = 125

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 180 LITARLAGAERATADVLIFLDSHTEANVNWLPPLLEPI 217
           +  AR A   +A  DV   LD+  +AN+  LP LL+PI
Sbjct: 9   MAAARRAFHSKAAEDVRRHLDAMEKANLERLPQLLDPI 46


>01_01_0860 - 6705087-6705490,6706900-6708573,6709714-6709801
          Length = 721

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 462 EQHFVLTWHKDIRCKTRNMCWDLPDSSPGSPIVLYACH--LGGGNQLWRYYPDTKQIKHG 519
           E H ++   +  + + R++CW+  D   G+ +    C+  L GG    +++    QI   
Sbjct: 17  EAHVLMAHFEGKKVRERDVCWEYCDKMEGNKVRCRFCYKVLNGGISRLKFH--LSQISSK 74

Query: 520 GHSNCVDHEPTTLRLHISRCDAAADTQRWT 549
           G + C   +P  +   +    AA +  R T
Sbjct: 75  GVNPCTKVKPDVIE-KVKAVIAAKEEHRET 103


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.138    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,617,743
Number of Sequences: 37544
Number of extensions: 921301
Number of successful extensions: 1671
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1669
Number of HSP's gapped (non-prelim): 3
length of query: 575
length of database: 14,793,348
effective HSP length: 86
effective length of query: 489
effective length of database: 11,564,564
effective search space: 5655071796
effective search space used: 5655071796
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)