Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001064-TA|BGIBMGA001064-PA|IPR001173|Glycosyl
transferase, family 2, IPR000772|Ricin B lectin, IPR008997|Ricin
B-related lectin
         (575 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   3.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   3.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   3.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   3.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   3.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 16/172 (9%)

Query: 2    NHDTAVLHAPPDLNKAV-NKENHFVPKSLKKI---DWHNYEQISSERKRVGIGEQGL--- 54
            NH+   LH P D + +V ++EN    K +K +   D   +   ++ +  V +  + +   
Sbjct: 1481 NHNEK-LHIPKDKSVSVLSRENEAGQKEVKVLLGSDKIKFVPGTTSQPEVFVNGEKIVVS 1539

Query: 55   --PAHLPKEESDLEESLYSVNG-FNGALSDKIPLSRSLPDIRHSGCKKKMYIESLPSVSV 111
               A+   EE+++   +Y +   F G  SDK  +S +L   R      + Y  S+  +  
Sbjct: 1540 RNKAYQKVEENEIIFEIYKMGDRFIGLTSDKFDVSLALDGERVMLKASEDYRYSVRGLCG 1599

Query: 112  VVPFHNEHWSTLLRTAYSVLYRSPEHLIKEIFLVDDASTKDFL--GKALDDY 161
               F ++  +  +    + L+R PEH +    L+ +    D L   K+L D+
Sbjct: 1600 --NFDHDSTNDFVGPK-NCLFRKPEHFVASYALISNQCEGDSLNVAKSLQDH 1648


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 13/55 (23%), Positives = 28/55 (50%)

Query: 101  MYIESLPSVSVVVPFHNEHWSTLLRTAYSVLYRSPEHLIKEIFLVDDASTKDFLG 155
            +Y+ S  S S+++ + + H      T Y++ YR+    + E+ L   A++ +  G
Sbjct: 1410 LYVTSSTSSSILLHWKSGHNGGASLTGYTLHYRTAHGNLDELQLSRHATSHELKG 1464



 Score = 23.4 bits (48), Expect = 5.2
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 193  ADVLIFLDSHTEANVNWLPPLLEP 216
            AD+ + + S     ++WLPP LEP
Sbjct: 1218 ADIKVVVSSPQALFISWLPP-LEP 1240


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 13/55 (23%), Positives = 28/55 (50%)

Query: 101  MYIESLPSVSVVVPFHNEHWSTLLRTAYSVLYRSPEHLIKEIFLVDDASTKDFLG 155
            +Y+ S  S S+++ + + H      T Y++ YR+    + E+ L   A++ +  G
Sbjct: 1406 LYVTSSTSSSILLHWKSGHNGGASLTGYTLHYRTAHGNLDELQLSRHATSHELKG 1460



 Score = 23.4 bits (48), Expect = 5.2
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 193  ADVLIFLDSHTEANVNWLPPLLEP 216
            AD+ + + S     ++WLPP LEP
Sbjct: 1214 ADIKVVVSSPQALFISWLPP-LEP 1236


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 71  SVNGFNGALSDKIPLSRSLPDIRHSGCKKKMY 102
           SV+G  G    K P+ RS P   HS C  +++
Sbjct: 454 SVSGEAGIEEVKSPVLRSPPAFSHSRCPPEIH 485


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 71  SVNGFNGALSDKIPLSRSLPDIRHSGCKKKMY 102
           SV+G  G    K P+ RS P   HS C  +++
Sbjct: 454 SVSGEAGIEEVKSPVLRSPPAFSHSRCPPEIH 485


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.138    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,121
Number of Sequences: 429
Number of extensions: 8239
Number of successful extensions: 27
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 11
length of query: 575
length of database: 140,377
effective HSP length: 61
effective length of query: 514
effective length of database: 114,208
effective search space: 58702912
effective search space used: 58702912
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)