GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001064-TA|BGIBMGA001064-PA|IPR001173|Glycosyl
transferase, family 2, IPR000772|Ricin B lectin, IPR008997|Ricin
B-related lectin
         (575 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20575.1 68414.m02567 dolichyl-phosphate beta-D-mannosyltrans...    36   0.097
At1g02330.1 68414.m00178 expressed protein contains similarity t...    36   0.097
At2g16250.1 68415.m01861 leucine-rich repeat transmembrane prote...    35   0.17 
At3g57910.1 68416.m06455 D111/G-patch domain-containing protein ...    31   2.1  
At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR...    31   2.1  
At3g19515.1 68416.m02473 expressed protein                             31   2.7  
At4g02790.1 68417.m00379 GTP-binding family protein contains Pfa...    30   3.6  
At4g01660.1 68417.m00216 ABC1 family protein contains Pfam domai...    30   3.6  
At4g17940.1 68417.m02672 expressed protein                             29   6.3  

>At1g20575.1 68414.m02567 dolichyl-phosphate
           beta-D-mannosyltransferase, putative /
           dolichol-phosphate mannosyltransferase, putative /
           mannose-P-dolichol synthase, putative similar to DPM1
           from Homo sapiens [SP|O60762]; member of
           glycosyltransferase family 2
          Length = 246

 Score = 35.5 bits (78), Expect = 0.097
 Identities = 26/109 (23%), Positives = 56/109 (51%), Gaps = 8/109 (7%)

Query: 110 SVVVPFHNEHWSTLLRTAYSVLYRSPEHLIKEIFLVDDAS---TKDFLGKALDDYLEGNM 166
           S+++P +NE  +  +   Y ++++    +  EI +VDD S   T++ + +    Y E   
Sbjct: 16  SIIIPTYNERLNIAI-IVY-LIFKHLRDVDFEIIVVDDGSPDGTQEIVKQLQQLYGED-- 71

Query: 167 PKVKVIRLPKRSGLITARLAGAERATADVLIFLDSHTEANVNWLPPLLE 215
            ++ +    K+ GL TA + G + AT D ++ +D+    +  +LP  ++
Sbjct: 72  -RILLRARAKKLGLGTAYIHGLKHATGDFVVIMDADLSHHPKYLPSFIK 119


>At1g02330.1 68414.m00178 expressed protein contains similarity to
           hepatocellular carcinoma-associated antigen 59
           GI:7158847 from [Homo sapiens]
          Length = 279

 Score = 35.5 bits (78), Expect = 0.097
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 6/101 (5%)

Query: 4   DTAVLHAPPDLNKAVNKENHFVPKSLKKIDWHNYEQISSERKRVGIGEQGLPAHLPKEES 63
           +TAVL   P++ K + +E     K  + ID  + E++ +E KRV      +P HL  ++ 
Sbjct: 91  ETAVLIEDPNMVKYIEQE--LAKKRGRNID--DAEEVENELKRVEDELYKIPDHLKVKKR 146

Query: 64  DLEESLYSVNGFNGALSDKIPLSRSLPDIRHSGCKKKMYIE 104
             EES  S     G    ++P+   L +I  +   KK+  E
Sbjct: 147 SSEES--STQWTTGIAEVQLPIEYKLKNIEETEAAKKLLQE 185


>At2g16250.1 68415.m01861 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 915

 Score = 34.7 bits (76), Expect = 0.17
 Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 22/156 (14%)

Query: 13  DLNKAVNKENHFVPKSLKKIDWHNYEQISSERKRVGIGEQGLPAHLPKE----ESDLEES 68
           D + ++N  +  VP+ L+K+         S+ + + IG+  L   LP +    ES L+  
Sbjct: 252 DFDLSINSLSGSVPQELRKL---------SKLQLMAIGDNLLSGTLPVDLFSAESQLQTL 302

Query: 69  LYSVNGFNGALSDKIPLSRSLPDIRHSGCKKKMYIESLPSVSVVVPFHNEHWSTLLRTAY 128
           +   NGF+G+L D   +  SLP +R     K  +   LP  S    + ++  + ++  + 
Sbjct: 303 VLRENGFSGSLPD---VCWSLPKLRILDIAKNNFTGLLPYSS----YDSDQIAEMVDISS 355

Query: 129 SVLYRSPEHLIKEIFLVDDASTKDFLGKALDDYLEG 164
           +  Y     +++  F + D S   F GK L DY+ G
Sbjct: 356 NTFYGELTPILRR-FRIMDLSGNYFEGK-LPDYVTG 389


>At3g57910.1 68416.m06455 D111/G-patch domain-containing protein
           contains Pfam profile PF01585: G-patch domain
          Length = 265

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 27  KSLKKIDWHNYEQISSERKRVGIGEQGLP--AHLPKEESDLEESLYSVNGFN-GALSDKI 83
           K LK ++WH   ++  ERK++   EQ L      P  ES++   L    G+  G+   K 
Sbjct: 56  KKLKNLNWHERRRLEKERKQIEEDEQTLARIVDTPIGESNIGFKLLKQMGYKPGSALGKQ 115

Query: 84  PLSRSLP---DIRHS 95
              R+ P   DIR S
Sbjct: 116 GSGRAEPVTMDIRRS 130


>At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1355

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 54  LPAHLPKEESDLEE-SLYSVNGFN-GALSDKIPLSRSLPDIRHSGCKKKMYIESLPSVSV 111
           L  H+P+E  +L       ++G N G L + I   R+L  +    CK    +ESLP +  
Sbjct: 816 LDIHIPQEICNLLSLKTLDLSGNNFGKLPESIKQFRNLESLILCHCKN---LESLPELPQ 872

Query: 112 VVPFHNEHWSTLLRTAYSVLYRSPEH 137
            + F N H    L+  +    + P H
Sbjct: 873 SLEFLNAHGCVCLKNIHRSFQQFPRH 898


>At3g19515.1 68416.m02473 expressed protein
          Length = 507

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 5/89 (5%)

Query: 25  VPKSLKKIDWHNYEQISSERKRVGIGEQGLPAHLPKEES-DLEESLYSVNGFNGALSDKI 83
           + ++ K+ +    ++  SE +     ++G P H PKE+S +++   +  + F+ +L++ I
Sbjct: 373 IDENEKEKEREREKETESEEENPEDNQKGNPEHNPKEKSEEMQYPDFGASKFHNSLNEHI 432

Query: 84  -PLS-RSLPDIRHSGCKKKMYIESLPSVS 110
            P S +SL ++  SG + KM  E L S+S
Sbjct: 433 MPDSDKSLGNV--SGEEIKMVTEGLTSLS 459


>At4g02790.1 68417.m00379 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 372

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 13  DLNKAVNKENHFVPKSLK----KIDWHNYEQISSERKRVGIGEQGLPAHLPKEESDLEES 68
           DLN  V +++  +   L+    +IDW N E       R     Q  P H+ K E +L E 
Sbjct: 54  DLNLDVTRKDDSIGFKLEANEDEIDWMNLESDIRLWTRALRPVQWYPGHIMKTEKELREQ 113

Query: 69  LYSVNGFNGALSDKIPLSRSLP 90
           L  ++        +IPLS + P
Sbjct: 114 LKLMDVVIEVRDARIPLSTTHP 135


>At4g01660.1 68417.m00216 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 623

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 14/89 (15%)

Query: 140 KEIFLVDDASTKDFLGKALDDYLEGNMPKVK-----VIRLPKRSGLITARLAGAERATAD 194
           K I L+D  + +D+  K +DDYL   M   +     VI + +R G +T    G E   +D
Sbjct: 466 KTINLIDFGAARDYPKKFVDDYLRMVMACAEKDSEGVIEMSRRLGFLT----GDE---SD 518

Query: 195 VLIFLDSHTEANVNWLPPLLEPIALDYRT 223
           V+  LD+H +A      P  EP    +RT
Sbjct: 519 VM--LDAHVQAGFIVGLPFAEPGGYAFRT 545


>At4g17940.1 68417.m02672 expressed protein
          Length = 274

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 13/46 (28%), Positives = 25/46 (54%)

Query: 40  ISSERKRVGIGEQGLPAHLPKEESDLEESLYSVNGFNGALSDKIPL 85
           I SER    +G +  PA +P+++   EE +   +G+   +S  +P+
Sbjct: 71  IRSERMLKRVGSKPSPARIPEDDEAGEEEIRFADGWGSMISGGLPV 116


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.138    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,323,198
Number of Sequences: 28952
Number of extensions: 699107
Number of successful extensions: 1295
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1291
Number of HSP's gapped (non-prelim): 11
length of query: 575
length of database: 12,070,560
effective HSP length: 85
effective length of query: 490
effective length of database: 9,609,640
effective search space: 4708723600
effective search space used: 4708723600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)