Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001063-TA|BGIBMGA001063-PA|IPR003511|DNA-binding HORMA,
IPR011011|Zinc finger, FYVE/PHD-type
         (494 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    24   2.8  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    22   8.5  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    22   8.5  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   8.5  

>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 54  TQAFEAFDKKYLHQLALCFYEGECKVENLIEYHIFEYSYNP 94
           T+  E  D+K + Q  L F+ G   V   + +  +E + NP
Sbjct: 259 TKQVELTDEKIVAQALLFFFAGFETVSTGVSFMAYELATNP 299


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
          protein.
          Length = 237

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 40 KCSDELAQFVSTALTQAFEAFDKKYLHQLALCFYEGEC 77
          KC + +A+  +     AF+A D K+L +     +  +C
Sbjct: 43 KCDNNVAELKTCGNGLAFDASDPKFLTENCDYIHNVDC 80


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
          protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 40 KCSDELAQFVSTALTQAFEAFDKKYLHQLALCFYEGEC 77
          KC + +A+  +     AF+A D K+L +     +  +C
Sbjct: 43 KCDNNVAELKTCGNGLAFDASDPKFLTENCDYIHNVDC 80


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 124 TIHLIRACVVIMQACQNELPSTYDVSLRLYYNDE 157
           T+HL+R      +      P T  +++  Y N+E
Sbjct: 155 TVHLVRVGTEPRRVISFPFPETQFIAVTAYQNEE 188


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.131    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,505
Number of Sequences: 317
Number of extensions: 3924
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 4
length of query: 494
length of database: 114,650
effective HSP length: 59
effective length of query: 435
effective length of database: 95,947
effective search space: 41736945
effective search space used: 41736945
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)