Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001063-TA|BGIBMGA001063-PA|IPR003511|DNA-binding HORMA,
IPR011011|Zinc finger, FYVE/PHD-type
(494 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049) 39 0.008
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.40
SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.92
SB_28331| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.8
SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15) 30 3.7
SB_46889| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.9
SB_32447| Best HMM Match : PHD (HMM E-Value=0.017) 30 4.9
SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12) 29 6.5
SB_22463| Best HMM Match : VWA (HMM E-Value=0) 29 6.5
SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014) 29 6.5
SB_44567| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.6
>SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049)
Length = 370
Score = 39.1 bits (87), Expect = 0.008
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 230 VRCPCNKQDADDAGLLTCGYCKKSQHAACFGV-REEAAP 267
V C C + DD ++ CG CK +HA C+G+ +EE AP
Sbjct: 177 VSCACGYNE-DDGLMIMCGICKFWEHAVCYGILQEEQAP 214
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 33.5 bits (73), Expect = 0.40
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 218 EQHSTGTDAEAQ---VRCPCNKQDADDAGLLTCGYCKKSQHAACFGVREEAAP 267
E TG + E RC C + DD ++ C C QH C G+ +A P
Sbjct: 1246 EDVDTGNEEEGDSGITRCICG-YNHDDGYMICCDKCSVWQHIECMGISSKAVP 1297
>SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1615
Score = 32.3 bits (70), Expect = 0.92
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 198 VARSYMKESMLSSREALVRSEQHSTGTDAEAQVRCPCNKQDADDAGLLTCGYCKKSQHAA 257
V + ++ L +E LV E D A C ++ ++ G + C C++ H
Sbjct: 1455 VPKKRRRKQKLKLQEELVNVEDDDEEEDPCAAASC--SRPIGEEVGWVQCDQCERWYHLV 1512
Query: 258 CFGVREEAAPRL 269
C G+ E A L
Sbjct: 1513 CIGLSSERAEAL 1524
>SB_28331| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 30.7 bits (66), Expect = 2.8
Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 4/127 (3%)
Query: 353 DLATPRQIIKDELKNVMSKFFKTNESNIVERLLAETLSQGSQSDPVGDVLSPLEKINLQN 412
D RQ I E ++ + K + N S + + A + S P G SPL +
Sbjct: 21 DFMKKRQNISSEKEDWLEKLSR-NLSTLNLKEQARESTDHRHSTPAGKFTSPLRSLASSR 79
Query: 413 TSTLGRVVQAEAPSTTEDSTLKQYRDAILFNDNMEELPLSGNHNPIQDMTN---IGKRTT 469
ST + + E + TE + R +L + NP+ N + KR
Sbjct: 80 LSTTNEIFEYETITVTETHEEYKLRQRLLQGGMTTQQSDGPQGNPLLSKDNKFGLLKRRC 139
Query: 470 KRKSTDK 476
K ST++
Sbjct: 140 KLDSTEE 146
>SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15)
Length = 857
Score = 30.3 bits (65), Expect = 3.7
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 230 VRCPCNKQDADDAGLLTCGYCKKSQHAACFGVREEAAP 267
+RC CN + + ++ C C QH+ C G+ E P
Sbjct: 105 IRCRCNLSE-EGGFMIQCEQCLTWQHSECVGLTELTVP 141
>SB_46889| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 754
Score = 29.9 bits (64), Expect = 4.9
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 166 GFLSTLESEDHLAPSYGDAVKLGSVETPYHRLVARSYMKESMLS-SREALVRSEQHSTGT 224
G ++T ++D + PSY D + G P+ V +K + R + ++ S T
Sbjct: 417 GRVTTFVAQDMIFPSYNDVINDGMSRVPF---VDPLDLKTTCPKFGRVTTLVAQDMSRDT 473
Query: 225 DAEAQVRCPCNKQDADDAGLLTCG 248
+A +Q P N + + D L CG
Sbjct: 474 EAISQSGRPLNSKRSKDEFCLVCG 497
>SB_32447| Best HMM Match : PHD (HMM E-Value=0.017)
Length = 443
Score = 29.9 bits (64), Expect = 4.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 241 DAGLLTCGYCKKSQHAACFGVRE 263
D+ LL C +C + HA+C+GV++
Sbjct: 110 DSPLLRCQHCMVTVHASCYGVQD 132
>SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)
Length = 1290
Score = 29.5 bits (63), Expect = 6.5
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 394 QSDPVGDVLSPLEKINLQNTSTLGRVVQAEAPSTTEDSTLKQYRDAILFNDNMEELPLSG 453
+ D VGDV L K + + + ++ ++ ED+ + +AI +M+ L L G
Sbjct: 208 KKDDVGDVTELLAKTKVAQVNLISFKGESLKLNSAEDAA--KICEAIKNCKDMQALCLEG 265
Query: 454 NHNPIQDMTNIGKRTTKRKSTDKAKRPGVKTKRARAD 490
N ++ I + +KR ++A + T R RA+
Sbjct: 266 NTIGVEAAKAIAEALSKRPEFERALWSDMFTGRVRAE 302
>SB_22463| Best HMM Match : VWA (HMM E-Value=0)
Length = 1865
Score = 29.5 bits (63), Expect = 6.5
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 131 CVVIMQACQNELPSTYDVSLRLYYNDET-PEGYQ 163
C + Q NE T+D++L L NDE PEG++
Sbjct: 240 CFSVCQEPPNECKGTHDLTLLLESNDEVGPEGFE 273
>SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014)
Length = 475
Score = 29.5 bits (63), Expect = 6.5
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 387 ETLSQGSQSDPVGDVLSPLEKINLQNTSTLGRVVQAEA-PSTTEDSTLKQYRDAILFNDN 445
+TL+ ++ V+SP E NL TS ++ A PS +D+T Q R+A + +
Sbjct: 175 KTLAGSTEKSQEEKVVSPEEDSNLDGTSNGSPSEESSAKPSPGDDTT--QSREAPPISTS 232
Query: 446 MEELP-LSGNHNPIQDMTNIGKRTTKRKSTDKAKRPGVKTKRARADK 491
+E+ L + N M G+ TT K VK R R K
Sbjct: 233 VEDAEMLKKSRNLPAWMATGGQATTASPPVTKPVGGPVKRGRGRPRK 279
>SB_44567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 759
Score = 29.1 bits (62), Expect = 8.6
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 33 KLRVLKNKCSDELAQFVSTALTQAFEAFDKKYLHQLALCFYEGECKVENL 82
+ + KN C D A QA + FDKK A C+ E + E +
Sbjct: 221 EFELAKNYCQDNPANLDKVLRKQAEDMFDKKSYTAAAKCYAETQVSFEEV 270
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.131 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,063,241
Number of Sequences: 59808
Number of extensions: 581443
Number of successful extensions: 1464
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1459
Number of HSP's gapped (non-prelim): 11
length of query: 494
length of database: 16,821,457
effective HSP length: 85
effective length of query: 409
effective length of database: 11,737,777
effective search space: 4800750793
effective search space used: 4800750793
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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