Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001063-TA|BGIBMGA001063-PA|IPR003511|DNA-binding HORMA,
IPR011011|Zinc finger, FYVE/PHD-type
         (494 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    27   0.47 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   2.5  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    23   7.7  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    23   7.7  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 26.6 bits (56), Expect = 0.47
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 362 KDELKNVMSKFFKTNESNIVE---RLLAETLSQGSQSDPVGDVLSPLEKIN 409
           +D+L N+M K FK     ++E   ++  + L+  ++ D + DVL+ L  IN
Sbjct: 37  EDKLDNLMDKQFKNKSLPVIEIWDQMTVKELANSAKRD-INDVLNVLYFIN 86


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 141 ELPSTYDVSLRLYYNDE 157
           +LP  Y+V   LY+NDE
Sbjct: 156 KLPPMYEVMPHLYFNDE 172


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
          protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 1  MKQLTVIAVSTVTYLKNVFPEDSYTQETFGGIKLRVLKN 39
          MK + +  V     L  VF ED YT + +  + + V+ N
Sbjct: 1  MKTILIALVPVCFLLGEVFSEDKYTTK-YDNVDIDVVLN 38


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
          protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 1  MKQLTVIAVSTVTYLKNVFPEDSYTQETFGGIKLRVLKN 39
          MK + +  V     L  VF ED YT + +  + + V+ N
Sbjct: 1  MKTILIALVPVCFLLGEVFSEDKYTTK-YDNVDIDVVLN 38


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.131    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,158
Number of Sequences: 429
Number of extensions: 5183
Number of successful extensions: 44
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 4
length of query: 494
length of database: 140,377
effective HSP length: 60
effective length of query: 434
effective length of database: 114,637
effective search space: 49752458
effective search space used: 49752458
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)