Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001063-TA|BGIBMGA001063-PA|IPR003511|DNA-binding HORMA,
IPR011011|Zinc finger, FYVE/PHD-type
(494 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g67370.1 68414.m07669 meiotic asynaptic mutant 1 (ASY1) ident... 48 1e-05
At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing pro... 35 0.14
At5g22260.1 68418.m02593 male sterility 1 protein, putative (MS1... 34 0.19
At1g15420.1 68414.m01850 expressed protein 33 0.33
At5g40540.1 68418.m04920 protein kinase, putative similar to pro... 33 0.43
At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contai... 33 0.43
At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing pr... 33 0.43
At5g42750.1 68418.m05206 expressed protein 31 1.7
At2g25120.1 68415.m03005 bromo-adjacent homology (BAH) domain-co... 31 1.7
At2g17210.1 68415.m01987 pentatricopeptide (PPR) repeat-containi... 31 1.7
At4g23250.1 68417.m03352 protein kinase family protein contains ... 31 2.3
At3g27560.1 68416.m03444 protein kinase (ATN1) almost identical ... 31 2.3
At2g01810.1 68415.m00111 PHD finger family protein contains Pfam... 31 2.3
At1g33420.1 68414.m04137 PHD finger family protein contains Pfam... 30 3.0
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 30 4.0
At1g35220.1 68414.m04368 expressed protein 30 4.0
At4g22140.1 68417.m03200 PHD finger family protein / bromo-adjac... 29 5.3
>At1g67370.1 68414.m07669 meiotic asynaptic mutant 1 (ASY1)
identical to meiotic asynaptic mutant 1 [Arabidopsis
thaliana] GI:7939627; contains Pfam profiles PF02301:
DNA-binding HORMA domain, PF04433: SWIRM domain
Length = 596
Score = 48.4 bits (110), Expect = 1e-05
Identities = 38/183 (20%), Positives = 78/183 (42%), Gaps = 14/183 (7%)
Query: 2 KQLTVIAVSTVTYLKNVFPEDSYTQETFGGIKLRVLKNKCSD-ELAQFVSTALTQAFEAF 60
+ L IA+ ++Y++ +FPE + ++ + +++ K D E + + ++A
Sbjct: 22 RNLLRIAIFNISYIRGLFPEKYFNDKSVPALDMKIKKLMPMDAESRRLIDWMEKGVYDAL 81
Query: 61 DKKYLHQLALCFYEGECKVEN-LIEYHIFEYSYNPD-------GVTMXXXXXXXXXXXXX 112
+KYL L E V+ +IE + F +SY+ +
Sbjct: 82 QRKYLKTLMFSICE---TVDGPMIEEYSFSFSYSDSDSQDVMMNINRTGNKKNGGIFNST 138
Query: 113 XXYSFDNVRERTIHLIRACVVIMQACQNELPSTYDVSLRL-YYNDETPEGYQAPGFLSTL 171
+ + +R ++R V +M+ +++P + ++L YY+D TP Y+ P F
Sbjct: 139 ADITPNQMRSSACKMVRTLVQLMRTL-DKMPDERTIVMKLLYYDDVTPPDYEPPFFRGCT 197
Query: 172 ESE 174
E E
Sbjct: 198 EDE 200
>At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing
protein similar to meiotic asynaptic mutant 1
[Arabidopsis thaliana] GI:7939627, aysnaptic 1 [Brassica
oleracea var. alboglabra] GI:23506946; contains Pfam
profile PF02301: HORMA domain
Length = 1399
Score = 34.7 bits (76), Expect = 0.14
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 3 QLTVIAVSTVTYLKNVFPEDSYTQETFGGIKLRVLKNKCSD-ELAQFVSTALTQAFEAFD 61
+L A+ ++Y++ +FP + + + L++ K D E + + ++A
Sbjct: 18 ELLRTAIFNISYIRGLFPVRYFKDMSVPALDLKMKKLMPMDAESRRLIGWMEKGVYDALH 77
Query: 62 KKYLHQLALCFYEGECKVENLIEYHIFEYSYN 93
KK+L +L FY E LIE +IF +SY+
Sbjct: 78 KKHLKKLI--FYICETVDGPLIEEYIFSFSYS 107
>At5g22260.1 68418.m02593 male sterility 1 protein, putative (MS1)
identical to male sterility 1 protein [Arabidopsis
thaliana] gi|15554513|emb|CAC69663 PMID:11696184;
contains Pfam profile PF00628: PHD-finger; identical to
cDNA male sterility 1 protein (ms1 gene) GI:15554514
Length = 672
Score = 34.3 bits (75), Expect = 0.19
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 227 EAQVRCPCNKQDADDAGLLTCGYCKKSQHAACFGVR-EEAAPRL 269
+ ++ C C + D ++ C C+ QH C GV+ E PR+
Sbjct: 612 DKRIECECGATEEDGERMVCCDICEVWQHTRCVGVQHNEEVPRI 655
>At1g15420.1 68414.m01850 expressed protein
Length = 278
Score = 33.5 bits (73), Expect = 0.33
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 395 SDPVGDVL-SPLEKINLQNTSTLGRVVQAEAPSTTEDSTLKQYRDAILFNDNMEELPLSG 453
SD GD+ +PL + + S + + PST DS L + RD +L +D + E P G
Sbjct: 12 SDAAGDIADTPLREKKHKKKSKKRAEPEPDIPST-RDSGLDEDRDGVLVDDTLNE-PTIG 69
Query: 454 NHNPIQDMTNIGKRTTKRKSTDKA 477
+ D+ N K ++ + D A
Sbjct: 70 DKLESLDLLNGEKVNSEESNRDSA 93
>At5g40540.1 68418.m04920 protein kinase, putative similar to
protein kinase ATN1 [Arabidopsis thaliana]
gi|1054633|emb|CAA63387
Length = 353
Score = 33.1 bits (72), Expect = 0.43
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 318 LRAGELADRFQLS-PLNALKLMKLLHSHGVIEDPGTDLATPRQIIKDELKNV-MSKFFKT 375
LR G L R + L+ + M+ LHSHGVI DL I+ + K V ++ F
Sbjct: 117 LRPGSLDIRVAVGYALDIARAMECLHSHGVIH---RDLKPESLILTADYKTVKLADFGLA 173
Query: 376 NESNIVERLLAET 388
E ++ E + AET
Sbjct: 174 REESLTEMMTAET 186
>At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contains
Pfam profile: PF00628: PHD-finger
Length = 704
Score = 33.1 bits (72), Expect = 0.43
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 230 VRCPCNKQDADDAGLLTCGYCKKSQHAACFGV 261
V+C C +D D +++C C+ QH C G+
Sbjct: 607 VKCICRARDDDGERMISCDVCEVWQHTRCCGI 638
>At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 384
Score = 33.1 bits (72), Expect = 0.43
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 411 QNTSTLGRVVQAEAPSTTEDSTLKQYRDAILFNDNMEELPLSGNHNPIQDMTNIGKRTTK 470
+ +S + + V+A P+ ++ LK+ R ++ DN E + ++M T+
Sbjct: 76 RRSSRISQKVKATTPTPDKEPLLKKRRSSLTKKDNKEAAEKNEEAAVKENMDVDKDGKTE 135
Query: 471 RKSTDKAKRPGVKTKRARADKENN 494
+K K T+ A A+KENN
Sbjct: 136 NAEAEKEKEKEGVTEIAEAEKENN 159
>At5g42750.1 68418.m05206 expressed protein
Length = 337
Score = 31.1 bits (67), Expect = 1.7
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 386 AETLSQGSQSDPVGDVLSPLEKINLQNTSTLGRVVQAEAPSTTEDSTLKQYRDAILF--N 443
++T S Q+DP LSP ++I L + + P + ST Y D
Sbjct: 65 SKTTSSYQQTDPFAVDLSPADEIFFHG-HLLPLHLLSHLPVSPRTST-GSYNDGFTLPVK 122
Query: 444 DNMEELPLSGNHNPIQDMTNIGKRTTKRKSTDKAK-RPGVKTK 485
D + + P + N+N +TNI + DKA+ VKTK
Sbjct: 123 DILPDQPTNNNNNTENAITNISTEAKDDNTEDKAEGEIRVKTK 165
>At2g25120.1 68415.m03005 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 380
Score = 31.1 bits (67), Expect = 1.7
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 361 IKDELKNVMSKFFKTNESNIVERLLAETLSQGSQSDPVGDVLSPLEKINLQNTSTLGRVV 420
+K +++ K F ++ N ++RL+A+T S +GD L +EK + TS R V
Sbjct: 206 VKKKVRKFTDKNFDVHQKNEIDRLVAKT------SLRLGD-LPDIEKDQVTKTSKGKRTV 258
Query: 421 QAEAPSTT 428
Q ++P T+
Sbjct: 259 QRKSPKTS 266
>At2g17210.1 68415.m01987 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 715
Score = 31.1 bits (67), Expect = 1.7
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 323 LADRFQLSPLNALKLMKLLHSHGVIEDPGTDLATPRQIIKDELKNVMSKFFKTNESNIVE 382
+A+ +L PL + + L S E D+A R+++K+ V++ + E N+ +
Sbjct: 621 VAEVLELEPLCSSGYL-LASSTFAAEKSWEDVAMMRRLVKERKVRVVAGYSMVREGNLAK 679
Query: 383 RLLA-ETLSQGSQSDPVGDVLSPLEK-INLQNTS 414
R LA + LSQ S S+ + DV+ L + + L +T+
Sbjct: 680 RFLAGDKLSQ-SDSE-LNDVVQSLHRCMKLDDTA 711
>At4g23250.1 68417.m03352 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 998
Score = 30.7 bits (66), Expect = 2.3
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 28 TFGGIKLRVLKNKCSDELAQF---VSTALTQAFEAFDKKYLHQLALCFYEGECKVENLIE 84
+FG + L ++ K + Q V+ +T ++ ++ K +H+L F + +CK + +I
Sbjct: 527 SFGVLILEIISGKKNSSFYQMDGLVNNLVTYVWKLWENKTMHELIDPFIKEDCKSDEVIR 586
Query: 85 Y-HI 87
Y HI
Sbjct: 587 YVHI 590
>At3g27560.1 68416.m03444 protein kinase (ATN1) almost identical (1
amino acid difference) to protein kinase ATN1
[Arabidopsis thaliana] gi|1054633|emb|CAA63387
Length = 356
Score = 30.7 bits (66), Expect = 2.3
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 332 LNALKLMKLLHSHGVIEDPGTDLATPRQIIKDELKNV-MSKFFKTNESNIVERLLAET 388
L+ + M+ LHSHG+I DL I+ + K V ++ F E ++ E + AET
Sbjct: 132 LDIARAMECLHSHGIIH---RDLKPENLILSADHKTVKLADFGLAREESLTEMMTAET 186
>At2g01810.1 68415.m00111 PHD finger family protein contains Pfam
profile: PF00628: PHD-finger
Length = 697
Score = 30.7 bits (66), Expect = 2.3
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 230 VRCPCNKQDADDAGLLTCGYCKKSQHAACFGVREEAA 266
V C C +D D ++ C CK H C + ++ A
Sbjct: 636 VDCKCGARDDDGERMVACDACKVWHHTLCNSIEDDEA 672
>At1g33420.1 68414.m04137 PHD finger family protein contains Pfam
profile: PF00628: PHD-finger
Length = 697
Score = 30.3 bits (65), Expect = 3.0
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 229 QVRCPCNKQDADDAGLLTCGYCKKSQHAACFGVREEAA 266
+V C C +D D +L C C H C G+ A
Sbjct: 603 KVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADA 640
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 29.9 bits (64), Expect = 4.0
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 406 EKINLQNTSTLGRVVQAEAPSTTEDSTLKQYRDAILFNDNMEELPLSGNHNPIQDMTNIG 465
EK+ LQ+ S L A T E ++ R ++L +D ++ L L + + +N+
Sbjct: 1245 EKLRLQSQSALKMAESARGSLTAERAST---RASLLTDDGIKSLQLQVSEMNLLRESNMQ 1301
Query: 466 KRTTKRKSTDKAKRPGVKTKRARADKEN 493
R + + +K + ++AR + EN
Sbjct: 1302 LREENKHNFEKCQEMREVAQKARMESEN 1329
>At1g35220.1 68414.m04368 expressed protein
Length = 1028
Score = 29.9 bits (64), Expect = 4.0
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 389 LSQGSQSDPVGDVLSPLEKINLQNTSTLGRVVQAEAPSTTEDSTLKQYRDAILFNDNMEE 448
+S G +D + D + L N + + P + DS Q +A + +D +E
Sbjct: 468 ISGGVATDAIVDTMG---SGTLSNDEAVTLLADVNLPDNSGDSLTSQIIEASMVSDAPQE 524
Query: 449 LPLSGNHNP 457
+PLS H P
Sbjct: 525 VPLSTEHVP 533
>At4g22140.1 68417.m03200 PHD finger family protein / bromo-adjacent
homology (BAH) domain-containing protein contains Pfam
domain, PF00628: PHD-finger and PF01426: BAH domain
Length = 196
Score = 29.5 bits (63), Expect = 5.3
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 200 RSYMKESMLSSREALVRSE-QHSTG--TDAEAQVRCPCNKQDADDAGLLTCGYCKKSQHA 256
++Y + + + + R E + +TG T V C C D ++ C CK H
Sbjct: 76 KNYTRLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHP 135
Query: 257 ACFGVREEAAPRL 269
AC G+ E A +L
Sbjct: 136 ACVGMTIEEAKKL 148
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.131 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,518,319
Number of Sequences: 28952
Number of extensions: 408566
Number of successful extensions: 1052
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1043
Number of HSP's gapped (non-prelim): 17
length of query: 494
length of database: 12,070,560
effective HSP length: 84
effective length of query: 410
effective length of database: 9,638,592
effective search space: 3951822720
effective search space used: 3951822720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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