Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001063-TA|BGIBMGA001063-PA|IPR003511|DNA-binding HORMA,
IPR011011|Zinc finger, FYVE/PHD-type
(494 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 34 0.039
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 32 0.21
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 32 0.21
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.28
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 31 0.48
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 31 0.48
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 30 0.64
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ... 30 0.85
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 29 2.0
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 29 2.0
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 28 2.6
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 28 3.4
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 27 4.5
SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces pomb... 27 6.0
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr... 27 6.0
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 27 6.0
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 27 6.0
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 27 6.0
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa... 27 7.9
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 27 7.9
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 34.3 bits (75), Expect = 0.039
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 227 EAQVRCPCNKQDADDAGLLTCGYCKKSQHAACFGVREEAAPRLPXXXXXXXXXXXXXXSP 286
+A + C C +D+ + C C H AC+G ++ PR P S
Sbjct: 332 KALLNCECG-DSTEDSEMFQCERCDGWVHCACYGFESDSDPRQPNQLLCYTCLLVDSESS 390
Query: 287 TDAALADLTAKKRECLCIF 305
+ L A +R CI+
Sbjct: 391 LYDRMTMLVAYRRAIRCIW 409
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 31.9 bits (69), Expect = 0.21
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 364 ELKNVMSKFFKTNESNIVERLLAETLSQGSQSDPVGDVLSPLEKINLQNTSTLGRVVQAE 423
E + V+ E+N E ++A L SQ+ + + SP+ K+N + T ++
Sbjct: 46 ESEQVVDSALSNPETNANEDIIAPQLP--SQNSEIIEKNSPVNKLNSSTSLTTHQLASLP 103
Query: 424 APSTTEDSTLKQYRDAILFNDNMEELPLSGNHNPIQDM 461
T+ + + +L D +E L G+ + +D+
Sbjct: 104 KLEVTDHDNVSEAETVVLNEDEEKETSLVGSVSVTEDL 141
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 31.9 bits (69), Expect = 0.21
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 227 EAQVRCPCNKQDADDAGLLTCGYCKKSQHAACFGVREEAAP 267
E VRC C Q+ + C C QHA+C G+ ++ P
Sbjct: 18 ETVVRCVCKSQEDIGDTWVQCDGCDCWQHASCVGLADKDIP 58
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 31.5 bits (68), Expect = 0.28
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 357 PRQIIKDELKNVMSKFFKTNESNIVERLLAETLSQGSQSDPVGDVLSPLEK-INLQNTST 415
P + +K+ + FF + +S++ + + +++Q DP V S ++K I ++ T
Sbjct: 148 PTERDNKSMKSFVRSFFTSTDSSVADTTIIPSMTQQFDKDPSTLVQSSIDKEIQVKEDGT 207
Query: 416 LGRV-VQAEAPSTTEDSTLK--QYRDAILFNDNMEELPLSGNHN 456
V V AE + T+K Q ++I F P + +N
Sbjct: 208 TSSVAVNAETAVQNVNGTIKESQGTESISFASKNNSAPSADANN 251
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 30.7 bits (66), Expect = 0.48
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 229 QVRCPCNKQDADDAGLLTCGYCKKSQHAACFGVREEAAP 267
++RC C +D DD + C C+ QHA C + P
Sbjct: 3 KIRCVCPFED-DDGFTIQCESCEVWQHAVCVNIDANNVP 40
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 30.7 bits (66), Expect = 0.48
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 217 SEQHSTGTDAEAQVRCPC----NKQDADDAGL-LTCGYCKKSQHAACFGVREEA 265
+E++ T + E RC C + +A D GL + C C QH C G +E+
Sbjct: 37 NEENETSSTGEV-TRCVCGIVESDDEASDGGLYIQCDQCSVWQHGNCVGFADES 89
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 30.3 bits (65), Expect = 0.64
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 414 STLGRVVQAEAPSTTEDSTLKQYRDAILFNDNMEELPLSGNHNPIQDMTNIGKRTTKRKS 473
ST + Q E+ +TTE S++ I +D + NP + T+ +++T+ S
Sbjct: 205 STPSIITQTESSTTTEGSSVASSESTIANSDQSSFITYESTQNPTANKTDASQQSTESTS 264
Query: 474 T 474
+
Sbjct: 265 S 265
>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 29.9 bits (64), Expect = 0.85
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 140 NELPSTYDVSLRLYYNDETPEGYQAPGFLSTLESEDHLAPSYGDAVKLGSVETPYHRLVA 199
+ LP T+D RLY +T EGY P + L + A L + + + +
Sbjct: 285 SRLPKTWDQ--RLYLTTKTTEGYYCPSMIYPLSKSSFQYIIFHYAAGLLFINSDFKIISL 342
Query: 200 RSYMKESMLSSREALVR 216
+ ESML + L +
Sbjct: 343 NEALFESMLGYSDLLTK 359
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 119 NVRERTIHLIRACVVIMQACQNE-LPSTYDVSLRLYYNDETPE 160
NVRE+ L+ + ++++AC E L V L Y +E PE
Sbjct: 830 NVREQAADLVSSITIVLKACGEEALMRKLGVVLYEYLGEEYPE 872
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 28.7 bits (61), Expect = 2.0
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 294 LTAKKRECLCIFRRALSWCGRASQLRAGELADRFQLSPLNALKLMKLLHSHGVIEDPGTD 353
L A + + I +R L +A A + + +L+P NAL + L S+G++ PG D
Sbjct: 114 LIADRNDTQAIMKRLLDSLKKAKNPIASGIRGQ-ELTPQNALNRITKLKSNGLLVKPGMD 172
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 28.3 bits (60), Expect = 2.6
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 375 TNESNIVERLLAETLSQGSQSDPVGDVLSPLEKINLQNTSTLGRVVQAEAPSTTEDST-- 432
T+ N ++ + E ++ V DV+SP ++N Q+ + + + ST+E T
Sbjct: 142 THGENDLDEVPTELNELANEVVDVDDVVSPSSELNAQSVNNILPISDDPKDSTSEAETRD 201
Query: 433 LKQYRDAILFNDNMEELPLSGNHN 456
I+ N E GN+N
Sbjct: 202 FNWLSKGIVIFPNSSECAFYGNNN 225
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 27.9 bits (59), Expect = 3.4
Identities = 17/67 (25%), Positives = 25/67 (37%)
Query: 203 MKESMLSSREALVRSEQHSTGTDAEAQVRCPCNKQDADDAGLLTCGYCKKSQHAACFGVR 262
+KE + S L +D A V C C + A G + C C + H C G+
Sbjct: 1428 IKELSVDSTSTLGGLNSSHLVSDQNASVICLCRQPFAISDGTVQCHNCLEWFHYECVGLS 1487
Query: 263 EEAAPRL 269
+ L
Sbjct: 1488 SDIVSTL 1494
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 27.5 bits (58), Expect = 4.5
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 364 ELKNVMSKFFKTN--ESNIVERLLAETLSQGSQSDPVGDVLSPLEKINLQNTSTL-GRVV 420
++ N S+F N +SN+ +R T + ++SD + LS L+ IN N + G +
Sbjct: 129 KINNYNSRFSHVNSKKSNLTDRKPIPTSRKSNKSDSLASALSQLD-INPSNVNKFDGLIN 187
Query: 421 QAEAPSTTED 430
+ P T E+
Sbjct: 188 IVDHPYTAEE 197
>SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 250
Score = 27.1 bits (57), Expect = 6.0
Identities = 17/67 (25%), Positives = 28/67 (41%)
Query: 131 CVVIMQACQNELPSTYDVSLRLYYNDETPEGYQAPGFLSTLESEDHLAPSYGDAVKLGSV 190
C+V + EL S L N E+P+ Q TL D L + ++ ++
Sbjct: 94 CIVGPTLTEEELASQDQAQSGLNSNSESPDDLQNAQTGETLRGFDRLREAGFTETEVNNL 153
Query: 191 ETPYHRL 197
+ +HRL
Sbjct: 154 RSQFHRL 160
>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 323
Score = 27.1 bits (57), Expect = 6.0
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 358 RQIIKDELKNVMSKFFKTNESNIVERLLAETLSQGSQSDPVGDVLSPLE-KINLQNTSTL 416
RQ ++ ELK +SK +TNE ER T Q + D + D L +E +I+L +
Sbjct: 130 RQNLEKELK-ALSKDSETNEEQ--ERKFWLTKLQIAVEDTL-DSLPHIEMEIDLLKRAQA 185
Query: 417 GRVVQAEAPSTTEDSTLKQYR-----DAILFNDNMEELPLSGNHNPIQDMTNIGKRTTKR 471
+ ++P E++ ++ R + + N + L N+ P+Q T + R R
Sbjct: 186 ELMKSEDSPEKDEETLRREERKQKEGSSWRLDLNTRDKILDKNNRPLQPFTIVSDRNETR 245
Query: 472 KS 473
K+
Sbjct: 246 KN 247
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 27.1 bits (57), Expect = 6.0
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 133 VIMQACQNELPSTYDVSL-RLYYNDETPEGYQAPGFLSTLESEDHL--APSYGDAVKLGS 189
+I+ A Q LP T+DVS+ L+ N Y FL T + + + SY D +GS
Sbjct: 1694 LIVLAKQRSLPVTFDVSVYSLFLNQ---NDYPGATFLPTADDQVEIWNKLSYIDCFSIGS 1750
Query: 190 VETPYHRLVARS 201
+ + + V +
Sbjct: 1751 IPSRLAKFVGNT 1762
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 458 IQDMTNIGKRTTKRKSTDKAKR 479
+ D++N+GK K T KAKR
Sbjct: 54 LSDVSNVGKNNADEKDTKKAKR 75
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 27.1 bits (57), Expect = 6.0
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 328 QLSPLNALKLMKLLHSHGVIEDPGTDLATPRQIIKDELKNVMSKFFKTNESNIVERLL 385
+LS + L L L HG +ED + PR ++L S+ FKT VE L+
Sbjct: 630 KLSNVRVLLLEILTRVHGKVEDAKMQILLPR---LEQLSEFNSEKFKTVSKREVEALV 684
>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 26.6 bits (56), Expect = 7.9
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 115 YSFDNVRERTIHLIRACVVIMQACQNELPSTYDVSLRLYYNDETPEGYQAPGFLSTL 171
+SFD +++ ++H + + I AC+ ++P YDV+ Y P GY+ F+ L
Sbjct: 334 FSFDFLQKASLH--SSTLPIHLACK-KIPF-YDVTSHHYTTPLNPNGYKLESFIFDL 386
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.6 bits (56), Expect = 7.9
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 116 SFDNVRERTIHLIRACVVIMQACQNELPSTYDVSLRLYYNDETPEGYQAPGFLSTL-ESE 174
S ++ RE +I IR I + + L + +SL Y+ P G L E+
Sbjct: 114 SAEHYRETSIDEIRILQKIREGDEKHLGKKHIISLLDYFVHRGPNGAHVCMVFEVLGENL 173
Query: 175 DHLAPSYGD-AVKLGSV-ETPYHRLVARSYM 203
L SYG V +G V + Y L+A Y+
Sbjct: 174 LSLIQSYGHRGVPVGIVKQIAYQLLIALDYL 204
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.131 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,064,501
Number of Sequences: 5004
Number of extensions: 81510
Number of successful extensions: 230
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 21
length of query: 494
length of database: 2,362,478
effective HSP length: 76
effective length of query: 418
effective length of database: 1,982,174
effective search space: 828548732
effective search space used: 828548732
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
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