Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001063-TA|BGIBMGA001063-PA|IPR003511|DNA-binding HORMA,
IPR011011|Zinc finger, FYVE/PHD-type
(494 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0668 + 19325747-19325785,19325825-19325881,19326361-193264... 62 1e-09
03_02_0064 + 5353417-5353419,5353440-5353536,5353631-5353699,535... 54 2e-07
03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238 35 0.13
03_05_0932 + 28924891-28924935,28925982-28926062,28926464-289265... 33 0.52
12_02_1045 + 25656495-25656566,25657788-25657884,25658327-256584... 33 0.69
09_04_0330 + 16731390-16731699,16731774-16732080,16732182-167335... 32 0.91
01_06_1536 + 38075023-38075359,38075834-38075963,38076204-380764... 32 1.2
11_01_0800 - 7047425-7048253,7048340-7048927,7049050-7049268,704... 31 1.6
08_02_0004 + 11187587-11187923,11187939-11189861,11190195-11190391 31 1.6
07_01_0623 + 4638952-4639024,4640422-4640439,4641312-4641660,464... 31 2.1
08_02_1417 - 26922775-26922986,26923102-26923291,26923816-269239... 30 3.7
02_01_0173 + 1190846-1191134,1191235-1191557,1191645-1191958,119... 30 3.7
12_01_0950 - 9463148-9464358,9465326-9465644 30 4.8
07_01_0304 + 2177044-2177046,2177173-2177235,2177323-2177460,217... 30 4.8
05_01_0146 - 953957-956278,956468-956786,957185-957213 30 4.8
03_02_0715 + 10621789-10623243,10624074-10625018 30 4.8
12_02_0692 - 22197582-22198214,22198761-22198935,22199089-221991... 29 6.4
07_03_0092 - 13329252-13329761,13329957-13330056,13330146-13330354 29 6.4
05_03_0341 - 12700232-12700709,12702101-12702159,12703246-12703473 29 8.5
>09_04_0668 +
19325747-19325785,19325825-19325881,19326361-19326490,
19328303-19328352,19328645-19328741,19328834-19328902,
19328986-19329078,19329194-19329317,19329904-19329973,
19330046-19330087,19330245-19330373,19330468-19330575,
19330729-19330771,19330840-19330878,19331076-19331200,
19331397-19331409,19331504-19331574,19331849-19331936,
19332515-19332600,19332708-19332762,19332859-19333028,
19333157-19333273,19333392-19333453,19333734-19333793,
19333855-19333921
Length = 667
Score = 62.1 bits (144), Expect = 1e-09
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 13/183 (7%)
Query: 2 KQLTVIAVSTVTYLKNVFPEDSYTQETFGGIKLRVLKNKCSD-ELAQFVSTALTQAFEAF 60
+ L IA+ ++Y++ +FPE + ++ +++++ K D E + + ++A
Sbjct: 94 RNLLRIAIYNISYIRGLFPEKYFNDKSVPALEMKIKKLMPMDTESRRLIDWMEKGVYDAL 153
Query: 61 DKKYLHQLALCFYEGECKVENLIEYHIFEYSY---NPDGVTMXXXXX-----XXXXXXXX 112
KKYL L C E E +IE + F +SY + D V M
Sbjct: 154 QKKYLKTLLFCICEKE--EGPMIEEYAFSFSYPNTSGDEVAMNLSRTGSKKNSATFKSNA 211
Query: 113 XXYSFDNVRERTIHLIRACVVIMQACQNELPSTYDVSLRL-YYNDETPEGYQAPGFLSTL 171
+ D +R +IR V +M+ +++P + ++L YY+D TPE Y+ P F
Sbjct: 212 AEVTPDQMRSSACKMIRTLVSLMRTL-DQMPEERTILMKLLYYDDVTPEDYEPPFFKCCA 270
Query: 172 ESE 174
++E
Sbjct: 271 DNE 273
>03_02_0064 +
5353417-5353419,5353440-5353536,5353631-5353699,
5353783-5353875,5353991-5354114,5354733-5354802,
5354876-5354917,5355072-5355200,5355288-5355395,
5357747-5357881,5358064-5358099
Length = 301
Score = 54.4 bits (125), Expect = 2e-07
Identities = 43/183 (23%), Positives = 82/183 (44%), Gaps = 13/183 (7%)
Query: 2 KQLTVIAVSTVTYLKNVFPEDSYTQETFGGIKLRVLKNKCSDELAQFVSTALTQA-FEAF 60
+ L IA ++Y++ +FPE + ++ ++++ K D ++ + + + ++A
Sbjct: 3 RNLLRIARYNISYIRGLFPEKYFNDKSVPAQEMKIKKLIPMDAASRRLINWMEKGVYDAL 62
Query: 61 DKKYLHQLALCFYEGECKVENLIEYHIFEYSY-NPDGVTMXXXXXXXXXXXXXXXY---- 115
KKYL L C E E +IE + F +SY N G + +
Sbjct: 63 QKKYLKTLLFCICEKE--EGPMIEEYAFSFSYPNMSGDEVAINLSRTESKKNSATFKPNA 120
Query: 116 ---SFDNVRERTIHLIRACVVIMQACQNELPSTYDVSLRL-YYNDETPEGYQAPGFLSTL 171
+ D +R +IR V +M+ +++P + ++L YY+D TPE Y+ P F
Sbjct: 121 AEVTPDQMRSSACKMIRTLVSLMRTL-DQIPEERTILMKLLYYDDVTPEDYEPPFFKCCA 179
Query: 172 ESE 174
+E
Sbjct: 180 NNE 182
>03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238
Length = 697
Score = 35.1 bits (77), Expect = 0.13
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 229 QVRCPCNKQDADDAGLLTCGYCKKSQHAACFGVRE-EAAPRL 269
+VRC C QD D ++ C C H C G+ + E P L
Sbjct: 638 EVRCVCGAQDDDGERMIACDACDVWHHTRCVGIADSEPVPPL 679
>03_05_0932 +
28924891-28924935,28925982-28926062,28926464-28926512,
28926599-28926677,28926762-28926921,28927307-28927440,
28927814-28927882,28928064-28928151,28928396-28928471,
28929267-28929340,28929478-28929585,28929858-28930160,
28930483-28930587,28930670-28930750,28930838-28931852,
28932086-28932201
Length = 860
Score = 33.1 bits (72), Expect = 0.52
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 227 EAQVRCPCNKQDADDAGLLTCG-YCKKSQHAACFGVREEAAPRLP 270
+ +VRCPC A+D+ + G C QH C + E+ A +P
Sbjct: 120 DVKVRCPCGYSMANDSMIKCEGPQCNTQQHVGCVIISEKPADSVP 164
>12_02_1045 +
25656495-25656566,25657788-25657884,25658327-25658419,
25658524-25658644,25659115-25659181,25659261-25659302,
25659455-25659583,25659674-25659733,25659887-25659929,
25660198-25660280,25660496-25661002,25661088-25661588
Length = 604
Score = 32.7 bits (71), Expect = 0.69
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 14/127 (11%)
Query: 58 EAFDKKYLHQLALCFYEGECKVEN-LIEYHIFEYSY---NPDGVTMXXXXXXXXXXXXXX 113
+A KKYL L E K E +++ IF +SY PD V M
Sbjct: 60 DALKKKYLKTLVFSICE---KYEGPVLQEFIFSFSYPSTGPDEVVMMMTRTGSKVITKFE 116
Query: 114 XYSF----DNVRERTIHLIRACVVIMQACQNELPSTYDVSLRL-YYNDETPEGYQAPGFL 168
+ + +R +IR +++ Q + + + ++L +Y D TPE Y+ P
Sbjct: 117 ASAVKVTPNQMRSSACKMIR--LIVQQTRTYPVQEEHAIEMKLSFYEDTTPEDYEPPFPK 174
Query: 169 STLESED 175
+ SED
Sbjct: 175 YCVNSED 181
>09_04_0330 +
16731390-16731699,16731774-16732080,16732182-16733561,
16734064-16734112
Length = 681
Score = 32.3 bits (70), Expect = 0.91
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 227 EAQVRCPCNKQDADDAGLLTCGYCKKSQHAACFGVRE-EAAPRL 269
E V C C D D + C C+ QH C G+ + E AP +
Sbjct: 618 ERVVDCACGAVDDDGERMACCDICEAWQHTRCAGIADTEDAPHV 661
>01_06_1536 +
38075023-38075359,38075834-38075963,38076204-38076419,
38076520-38077137,38077226-38078075
Length = 716
Score = 31.9 bits (69), Expect = 1.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 230 VRCPCNKQDADDAGLLTCGYCKKSQHAACFGVRE 263
V C C +D D +L C C QH C G+ +
Sbjct: 621 VDCTCGAKDDDGERMLACDVCGVWQHTRCSGISD 654
>11_01_0800 -
7047425-7048253,7048340-7048927,7049050-7049268,
7049398-7049518,7050593-7050983
Length = 715
Score = 31.5 bits (68), Expect = 1.6
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 230 VRCPCNKQDADDAGLLTCGYCKKSQHAACFGVRE 263
V+C C D D +L+C C H C G+ +
Sbjct: 626 VKCSCGATDDDGERMLSCDTCHMWMHTRCAGISD 659
>08_02_0004 + 11187587-11187923,11187939-11189861,11190195-11190391
Length = 818
Score = 31.5 bits (68), Expect = 1.6
Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 12/144 (8%)
Query: 353 DLATPRQIIKDELKNVMSKFFKTNESNIVERLLAETLSQGSQSDPVGDVLS------PLE 406
+LA +++ K+E ++ K FK E+ I + E G + +G +LS E
Sbjct: 350 ELARVKKVKKNE--DMAVKIFKNQETKIEQIKRKEQDKHGKEEQNLGKILSEEEQWAENE 407
Query: 407 KINLQNTSTLGRVVQAEAPSTTEDSTLKQYRDAILFNDNMEELPLSGNHNPIQDM-TNIG 465
++ L++ ++ E +QY D F + ++E+ L N ++ M ++G
Sbjct: 408 RLFLESYEEEINLINEMENIENEIDNTEQYND---FINTLDEVGLHNLDNAMEAMEVDLG 464
Query: 466 KRTTKRKSTDKAKRPGVKTKRARA 489
KR K G + + ARA
Sbjct: 465 TGKRKRYGEGTVKNEGERERPARA 488
>07_01_0623 +
4638952-4639024,4640422-4640439,4641312-4641660,
4643917-4643985,4645587-4645722,4646835-4646870
Length = 226
Score = 31.1 bits (67), Expect = 2.1
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 148 VSLRLYYNDETPEGYQAPGFLSTLESEDHLAPSYGDAVKLGSVETPYHRLVARSYMKESM 207
V +R YY E G + P F E L+ Y D ++E + RSY K
Sbjct: 66 VRVRWYYRPEESMGGRRP-FHGA--KEVFLSDHY-DVQSADTIEGKCNVHSFRSYTKLDS 121
Query: 208 LSSREALVRSEQHS-TGTDAEAQVR--CPCNKQDADDAGLLTCGYCKKSQHAACFGVREE 264
+++ + R E S TG+ ++ C C D ++ C C H +C G+ +
Sbjct: 122 VNAEDFFCRFEYKSATGSFVPDRIAVFCKCEMPYNPDDLMIQCEECSDWFHPSCIGMTIK 181
Query: 265 AAPRL 269
A +L
Sbjct: 182 DAKKL 186
>08_02_1417 -
26922775-26922986,26923102-26923291,26923816-26923928,
26924032-26924112,26925329-26926661
Length = 642
Score = 30.3 bits (65), Expect = 3.7
Identities = 18/87 (20%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 7 IAVSTVTYLKNVFPEDSYTQETFGGIKLRVLKNKCSDELAQFVSTALTQAFEAFDKKYLH 66
+AVS V +LK +P ++ + + + V++ +LA ++ +A + K +
Sbjct: 457 VAVSCVVFLKGFYPPRAFERRRYMNV---VVQKAVHPQLAGYIHSATSGLLPFIQKGLVE 513
Query: 67 QLALCFYEGECKVENLIEYHIFEYSYN 93
++ + FY+ K +E +F+ + N
Sbjct: 514 RVVVIFYD---KAHVPVEKFVFKLAVN 537
>02_01_0173 +
1190846-1191134,1191235-1191557,1191645-1191958,
1192302-1192461
Length = 361
Score = 30.3 bits (65), Expect = 3.7
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 210 SREALVRSEQHSTGTDAEAQVRCPCNKQDADDAGLLTCGYCKKSQHAACFGVREEAAPRL 269
+R A R+E S G + VRC A LL C C + H C PR+
Sbjct: 13 ARPAATRAEGGSGGDGDDDDVRCEACGSGESAAELLLCDGCDRGLHIFCL---RPILPRV 69
Query: 270 P 270
P
Sbjct: 70 P 70
>12_01_0950 - 9463148-9464358,9465326-9465644
Length = 509
Score = 29.9 bits (64), Expect = 4.8
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 351 GTDLATPRQIIKDELKNVMSKFFKTNESNIVERLLAE 387
G LAT R+I K V KFFK N +++E+L+++
Sbjct: 126 GARLAT-REIKHRRAKRVKQKFFKQNRGHLLEQLISQ 161
>07_01_0304 +
2177044-2177046,2177173-2177235,2177323-2177460,
2177886-2178778,2178935-2179005,2179132-2179234,
2180017-2180092,2180870-2180977
Length = 484
Score = 29.9 bits (64), Expect = 4.8
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 323 LADRFQLSPLNALKLMKLLHSHGVIEDPGTDLATPRQIIKDELKNVMSKFFKTNESNIVE 382
LAD +LS A + + G+ ED G D+ + D+L +V SK KT N +
Sbjct: 9 LADLDELSDNEAYPEEENAEAVGMDEDGGEDMLDLESLNYDDLDSV-SKLQKTQCYNDIM 67
Query: 383 RLLAETLSQGSQSDPVGDVL 402
+ + + L +G+ G +L
Sbjct: 68 QKVEDALQKGTDFSNQGSIL 87
>05_01_0146 - 953957-956278,956468-956786,957185-957213
Length = 889
Score = 29.9 bits (64), Expect = 4.8
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 305 FRRALSWCGRASQLRAGELADRFQLSPLNALKL----MKLLHSHGVIEDPGTDLATPRQI 360
FRR L+ A + G D +++ +NA K+ +++ G+++ + +
Sbjct: 238 FRRELAMANEAKKAALGHADDAMKIAEVNAEKVEILSSEVVRLKGLLDSTAESEESKNRE 297
Query: 361 IKDELKNVMSKFF----KTNESNIVERLLAET 388
++ +KN+ S+ K E+ I+E LAET
Sbjct: 298 TEELVKNLESEVSVLKGKLEEARIIEERLAET 329
>03_02_0715 + 10621789-10623243,10624074-10625018
Length = 799
Score = 29.9 bits (64), Expect = 4.8
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 234 CNKQDADDAGLLTCGYCKKSQHAACFGVREE 264
CN Q DD+ +L C C S H C G+ E
Sbjct: 509 CN-QGGDDSLMLLCDICDSSAHTYCVGLGRE 538
>12_02_0692 -
22197582-22198214,22198761-22198935,22199089-22199185,
22199359-22199473,22199546-22199633,22199972-22200063,
22200138-22200629,22201025-22201048,22201348-22203489
Length = 1285
Score = 29.5 bits (63), Expect = 6.4
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 21 EDSYTQETFGGIK-LRVLKNKCSDELAQFVSTALTQAFEAFD 61
+D QE G+K +RVL +CSD + + ALT A +A D
Sbjct: 364 DDCGLQEGSWGLKFVRVLVERCSDTVGGVRARALTNAAQALD 405
>07_03_0092 - 13329252-13329761,13329957-13330056,13330146-13330354
Length = 272
Score = 29.5 bits (63), Expect = 6.4
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 364 ELKNVMSKFFKTNESNIVERLLAETLSQGSQSDPVGDVLSPLEKINLQNTSTL 416
+++ ++ KT +N E+L E + P GD+L+ L+ +N+ TL
Sbjct: 86 KVRGMLMDIIKTRHANKDEKLREEIAMECGDEMPTGDMLNKLKMVNMFLLETL 138
>05_03_0341 - 12700232-12700709,12702101-12702159,12703246-12703473
Length = 254
Score = 29.1 bits (62), Expect = 8.5
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 391 QGSQSDPVGDVLSPLEKINLQNTSTL-GRVVQAEAPSTTEDSTLKQYRDAILFNDNMEEL 449
+ S +D G +S E + + +S++ + ++ + EDS K+Y+DA+ EE
Sbjct: 62 RNSDNDDGGSSVSS-EVVQVSTSSSVTSKTIEEAFSAIPEDSRRKEYQDAVAKAQAEEET 120
Query: 450 PLSGNHNPIQDMTNIGKRTTKRKSTDKA 477
S ++ T K K+ +D+A
Sbjct: 121 RASQRTRQAEEDTTTVKAGGKKTPSDEA 148
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.131 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,741,691
Number of Sequences: 37544
Number of extensions: 487033
Number of successful extensions: 1230
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1219
Number of HSP's gapped (non-prelim): 21
length of query: 494
length of database: 14,793,348
effective HSP length: 85
effective length of query: 409
effective length of database: 11,602,108
effective search space: 4745262172
effective search space used: 4745262172
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
- SilkBase 1999-2023 -