Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001063-TA|BGIBMGA001063-PA|IPR003511|DNA-binding HORMA,
IPR011011|Zinc finger, FYVE/PHD-type
(494 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U52003-6|AAG00053.1| 291|Caenorhabditis elegans High incidence ... 40 0.004
AF172351-1|AAD51103.1| 291|Caenorhabditis elegans meiotic chrom... 40 0.004
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 36 0.086
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 36 0.086
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 36 0.086
AC084197-33|AAN63423.2| 352|Caenorhabditis elegans Him-three pa... 34 0.20
AF077536-2|AAK31410.2| 527|Caenorhabditis elegans Hypothetical ... 34 0.26
U61954-13|AAK29805.2| 352|Caenorhabditis elegans Him-three para... 33 0.46
AL132952-21|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical... 33 0.46
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical... 33 0.46
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 33 0.61
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 33 0.61
U64598-12|AAX88835.1| 408|Caenorhabditis elegans Choline kinase... 31 1.9
U64598-11|AAK39220.1| 429|Caenorhabditis elegans Choline kinase... 31 1.9
U58746-5|AAB00625.1| 310|Caenorhabditis elegans Hypothetical pr... 31 1.9
Z81059-6|CAJ15164.1| 176|Caenorhabditis elegans Hypothetical pr... 31 2.5
AF077536-3|AAK31409.1| 726|Caenorhabditis elegans Hypothetical ... 31 2.5
Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical pr... 30 3.2
Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical pr... 30 3.2
U64598-8|AAQ82848.1| 396|Caenorhabditis elegans Hypothetical pr... 30 3.2
AC024859-20|ABA00160.2| 322|Caenorhabditis elegans Hypothetical... 30 3.2
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family... 30 4.3
Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical pr... 29 5.7
AF239999-1|AAF63495.1| 203|Caenorhabditis elegans MDF-2 protein. 29 5.7
AC084158-32|AAM15619.1| 116|Caenorhabditis elegans Mad (yeast m... 29 5.7
AC084158-31|AAK68576.1| 203|Caenorhabditis elegans Mad (yeast m... 29 5.7
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr... 29 7.5
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr... 29 7.5
Z78542-5|CAB01748.1| 915|Caenorhabditis elegans Hypothetical pr... 29 7.5
Z83227-2|CAB05727.1| 270|Caenorhabditis elegans Hypothetical pr... 29 9.9
U53332-2|AAK31532.1| 473|Caenorhabditis elegans Tetraspanin fam... 29 9.9
U40952-2|AAA81737.1| 818|Caenorhabditis elegans Hypothetical pr... 29 9.9
DQ178635-1|ABD75714.1| 361|Caenorhabditis elegans tetraspanin f... 29 9.9
>U52003-6|AAG00053.1| 291|Caenorhabditis elegans High incidence of
males (increasedx chromosome loss) protein 3 protein.
Length = 291
Score = 39.9 bits (89), Expect = 0.004
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 14/145 (9%)
Query: 33 KLRVLKNKCSDELAQFVSTALTQAFEAFDKKYLHQLALCFYEGECKVENLIEYHIFEYSY 92
KL V + S A+ VS+ +A + YL + A+ FY+ + E++ E F ++Y
Sbjct: 69 KLLVTAFQSSVPAAKRVSSTFDGLRDAIQQGYLREFAIVFYK-KPNEEDINEVFAFRFAY 127
Query: 93 NPDG---VTMXXXXXXXXXXXXXXXYSF---DNVRER---TIHLIRACVVIMQACQNELP 143
+G V++ F DN ++ TI + C+ M+ LP
Sbjct: 128 GDEGEIFVSLNNGIDTNESSQELLQAKFVDTDNTKQMFASTIKKLHRCIKKMEP----LP 183
Query: 144 STYDVSLRLYYNDETPEGYQAPGFL 168
D S R+ Y ++ P+ Y G+L
Sbjct: 184 QGSDASFRVSYTEKAPKDYTPEGYL 208
>AF172351-1|AAD51103.1| 291|Caenorhabditis elegans meiotic
chromosome core protein protein.
Length = 291
Score = 39.9 bits (89), Expect = 0.004
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 14/145 (9%)
Query: 33 KLRVLKNKCSDELAQFVSTALTQAFEAFDKKYLHQLALCFYEGECKVENLIEYHIFEYSY 92
KL V + S A+ VS+ +A + YL + A+ FY+ + E++ E F ++Y
Sbjct: 69 KLLVTAFQSSVPAAKRVSSTFDGLRDAIQQGYLREFAIVFYK-KPNEEDINEVFAFRFAY 127
Query: 93 NPDG---VTMXXXXXXXXXXXXXXXYSF---DNVRER---TIHLIRACVVIMQACQNELP 143
+G V++ F DN ++ TI + C+ M+ LP
Sbjct: 128 GDEGEIFVSLNNGIDTNESSQELLQAKFVDTDNTKQMFASTIKKLHRCIKKMEP----LP 183
Query: 144 STYDVSLRLYYNDETPEGYQAPGFL 168
D S R+ Y ++ P+ Y G+L
Sbjct: 184 QGSDASFRVSYTEKAPKDYTPEGYL 208
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 35.5 bits (78), Expect = 0.086
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 183 DAVKLGSVETPYHRLVARSYMKESMLSSREALVRSEQHSTGTDAEAQVRCPCNKQDADDA 242
D + G E +R A+ +++ L S A R+ + + Q C QD +
Sbjct: 219 DEAEKGKEEARINRAAAKVDKRKAALESARASKRARKEQGVVEENHQENCEVCNQDGE-- 276
Query: 243 GLLTCGYCKKSQHAACFGVREEAAP 267
L+ C C ++ H AC E P
Sbjct: 277 -LMLCDTCTRAYHVACIDENMEQPP 300
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 35.5 bits (78), Expect = 0.086
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 183 DAVKLGSVETPYHRLVARSYMKESMLSSREALVRSEQHSTGTDAEAQVRCPCNKQDADDA 242
D + G E +R A+ +++ L S A R+ + + Q C QD +
Sbjct: 219 DEAEKGKEEARINRAAAKVDKRKAALESARASKRARKEQGVVEENHQENCEVCNQDGE-- 276
Query: 243 GLLTCGYCKKSQHAACFGVREEAAP 267
L+ C C ++ H AC E P
Sbjct: 277 -LMLCDTCTRAYHVACIDENMEQPP 300
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 35.5 bits (78), Expect = 0.086
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 183 DAVKLGSVETPYHRLVARSYMKESMLSSREALVRSEQHSTGTDAEAQVRCPCNKQDADDA 242
D + G E +R A+ +++ L S A R+ + + Q C QD +
Sbjct: 219 DEAEKGKEEARINRAAAKVDKRKAALESARASKRARKEQGVVEENHQENCEVCNQDGE-- 276
Query: 243 GLLTCGYCKKSQHAACFGVREEAAP 267
L+ C C ++ H AC E P
Sbjct: 277 -LMLCDTCTRAYHVACIDENMEQPP 300
>AC084197-33|AAN63423.2| 352|Caenorhabditis elegans Him-three
paralog protein 2 protein.
Length = 352
Score = 34.3 bits (75), Expect = 0.20
Identities = 22/103 (21%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 118 DNVRERTIHLIRACVVIMQACQNELPSTYDVSLRLYYNDETPEGYQAPGFLSTLESEDHL 177
++VR++ + ++R+ + LP+ + + RL Y ++ P ++ GF + S +
Sbjct: 165 ESVRDQMVTIVRSVQFLCTKVLEPLPAEFTANFRLKYTNDAPSNFRIDGFDDS--STFYT 222
Query: 178 APSYGDAVKLGSVETPYHRLVARSYMKESMLSSREALVRSEQH 220
P +V +G + +H + + K SM S A + + H
Sbjct: 223 LPDGIQSVTIGHLRPGHHAAHMQCWSK-SMSDSYAAELTLKGH 264
>AF077536-2|AAK31410.2| 527|Caenorhabditis elegans Hypothetical
protein C16A11.4 protein.
Length = 527
Score = 33.9 bits (74), Expect = 0.26
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 227 EAQVRCPCNKQDADDAGLLTCGYCKKSQHAACFGV 261
+ +VRC C + D+ L+ C C+K QHA C V
Sbjct: 31 QKEVRCQCGTNNTDNR-LIKCVECEKWQHAICMSV 64
>U61954-13|AAK29805.2| 352|Caenorhabditis elegans Him-three paralog
protein 1 protein.
Length = 352
Score = 33.1 bits (72), Expect = 0.46
Identities = 12/50 (24%), Positives = 26/50 (52%)
Query: 118 DNVRERTIHLIRACVVIMQACQNELPSTYDVSLRLYYNDETPEGYQAPGF 167
D+VR++ + ++R+ + LP + + RL Y ++ P ++ GF
Sbjct: 165 DSVRDQMVTIVRSVQFLCTKVLEPLPEEFTANFRLEYTNDAPSNFRIDGF 214
>AL132952-21|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
protein Y51H4A.12 protein.
Length = 1677
Score = 33.1 bits (72), Expect = 0.46
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 217 SEQHSTGTDAEAQ----VRCPCNKQDADDAGLLTCGYCKKSQHAACFGV 261
S+ S G D A+ +RC C D D + C CK QH AC G+
Sbjct: 810 SDSESEGIDEAAEESWTMRCHCG-MDHGDGDTIECEGCKTWQHMACMGL 857
>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
protein F15E6.1 protein.
Length = 1655
Score = 33.1 bits (72), Expect = 0.46
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 217 SEQHSTGTDAEAQ----VRCPCNKQDADDAGLLTCGYCKKSQHAACFGV 261
S+ S G D A+ +RC C D D + C CK QH AC G+
Sbjct: 802 SDSESEGIDEAAEESWTMRCHCG-MDHGDGDTIECEGCKTWQHMACMGL 849
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 32.7 bits (71), Expect = 0.61
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 361 IKDELKNVMSKFFKTNESNIVERLLAETLSQGSQSDPVGDVLSPLEKINL 410
I+ ++ N+ +KF E +VE+ ETL++ ++S PV P E +N+
Sbjct: 1199 IQTQMMNLQTKF--AQEDELVEKRTVETLTEWNKSKPVEGAQRPQEALNV 1246
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 32.7 bits (71), Expect = 0.61
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 361 IKDELKNVMSKFFKTNESNIVERLLAETLSQGSQSDPVGDVLSPLEKINL 410
I+ ++ N+ +KF E +VE+ ETL++ ++S PV P E +N+
Sbjct: 1199 IQTQMMNLQTKF--AQEDELVEKRTVETLTEWNKSKPVEGAQRPQEALNV 1246
>U64598-12|AAX88835.1| 408|Caenorhabditis elegans Choline kinase a
protein 2, isoformb protein.
Length = 408
Score = 31.1 bits (67), Expect = 1.9
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 148 VSLRLYYNDETPEGYQAPGFLSTLESEDHLAPS-YG 182
V LR+Y+N ET A + TL SE HL P YG
Sbjct: 87 VLLRVYFNPETESHLVAESVIFTLLSERHLGPKLYG 122
>U64598-11|AAK39220.1| 429|Caenorhabditis elegans Choline kinase a
protein 2, isoforma protein.
Length = 429
Score = 31.1 bits (67), Expect = 1.9
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 148 VSLRLYYNDETPEGYQAPGFLSTLESEDHLAPS-YG 182
V LR+Y+N ET A + TL SE HL P YG
Sbjct: 108 VLLRVYFNPETESHLVAESVIFTLLSERHLGPKLYG 143
>U58746-5|AAB00625.1| 310|Caenorhabditis elegans Hypothetical
protein R05G6.4 protein.
Length = 310
Score = 31.1 bits (67), Expect = 1.9
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 350 PGTDLATPRQII----KDELKNVMSKFFKTNESNIVERLLAETLSQGSQSDPV-GDVLSP 404
PGT+ A R+ + +DEL N + ++V+ + E L +G DP+ G+ +S
Sbjct: 220 PGTETAAHRKFLCPVTRDELTNTTRCAYLKKSKSVVKYDVVEKLIKGDGIDPINGEPMSE 279
Query: 405 LEKINLQNTST 415
+ I LQ T
Sbjct: 280 DDIIELQRGGT 290
>Z81059-6|CAJ15164.1| 176|Caenorhabditis elegans Hypothetical
protein F11F1.8 protein.
Length = 176
Score = 30.7 bits (66), Expect = 2.5
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 363 DELKNVMSKFFKTNESNIVERLLAETLS-QGSQSDPVGDVLSPLEKINLQNTSTLGRVVQ 421
DELKN++S FK ++E+LL E S D +GD+ ++ NL + + + Q
Sbjct: 87 DELKNLISTVFK-----LIEQLLNEVADILQSLPDVLGDLSKIVDDKNLTSVEKIDAINQ 141
Query: 422 AEAPSTTEDSTLKQYRDAILFNDNMEELP 450
+ E +T+ +L + ELP
Sbjct: 142 LRGTNKIELNTIIFIITQLLNGGALPELP 170
>AF077536-3|AAK31409.1| 726|Caenorhabditis elegans Hypothetical
protein C16A11.3 protein.
Length = 726
Score = 30.7 bits (66), Expect = 2.5
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 229 QVRCPCNKQDADDAGLLTCGYCKKSQHAACFGVR 262
++ C C + ++ L+ C C + QHA C GVR
Sbjct: 23 KIECQCGTNNTNNR-LIKCVGCAQWQHAVCMGVR 55
>Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical protein
W07E11.1 protein.
Length = 2207
Score = 30.3 bits (65), Expect = 3.2
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 218 EQHSTGTDAEAQVRCPCNKQDADDAGLLTCGYCKKSQHAACFGVRE 263
EQ + TD + + P +K D+D A + G C++ Q + + E
Sbjct: 2127 EQLNLKTDPRSNILTPKDKYDSDVAKVFAAGDCRRGQSLVVWAIHE 2172
>Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical protein
W07E11.1 protein.
Length = 2207
Score = 30.3 bits (65), Expect = 3.2
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 218 EQHSTGTDAEAQVRCPCNKQDADDAGLLTCGYCKKSQHAACFGVRE 263
EQ + TD + + P +K D+D A + G C++ Q + + E
Sbjct: 2127 EQLNLKTDPRSNILTPKDKYDSDVAKVFAAGDCRRGQSLVVWAIHE 2172
>U64598-8|AAQ82848.1| 396|Caenorhabditis elegans Hypothetical
protein C52B9.2b protein.
Length = 396
Score = 30.3 bits (65), Expect = 3.2
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 327 FQLSPL-NALKLMKLLHSHGVIEDPGTDLATPRQIIK 362
F+L P AL LLH+ G EDP DL T ++++K
Sbjct: 236 FELIPSPEALPSYFLLHNFGEAEDPENDLLTDQELLK 272
>AC024859-20|ABA00160.2| 322|Caenorhabditis elegans Hypothetical
protein Y71H2AM.24 protein.
Length = 322
Score = 30.3 bits (65), Expect = 3.2
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 355 ATPRQIIKDELKNVMSKFFKTNESNIVERLLAETLSQGSQSDP-VGDVLSPLEKINLQNT 413
A+ QI+ D +++K + NE V+ + S+G+Q D + ++ S LE ++
Sbjct: 3 ASSEQILLDRKDRLIAKLEQRNEERKVQTEECLSKSEGAQIDNLMAEIKSDLEAKKSVDS 62
Query: 414 STLGRVVQAEAPSTTEDSTLKQYRDAILFNDNMEELPLSGNHNPIQDMTNIGKRTTKRK 472
+ R ++ + P LKQ + I FN + E L S ++ + + N + K+K
Sbjct: 63 QKIDR-LRKKFP------RLKQTKSIIFFNFSEEFLAFSTSNRQTKTIQNFLEDVRKQK 114
>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
protein 3 protein.
Length = 3343
Score = 29.9 bits (64), Expect = 4.3
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 384 LLAETLSQGSQSDPVGDVLS--PLEKINLQNTSTLGRVVQAEAPSTTEDSTLKQYRDAIL 441
+L+ S + + GD+LS PL++ L A PS + S + + I
Sbjct: 1691 ILSGNTSLFAVNSTTGDILSLIPLDREESSLHELLIEAKDAGIPSLSATSKILIHVGDI- 1749
Query: 442 FNDNMEELPLSGNHNPIQDMTNIGKRTTKRKSTDKAK 478
NDN E LS I + + IG + + +TDK K
Sbjct: 1750 -NDNTPEFELSSYFIKISENSKIGSKIIRILATDKDK 1785
>Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical
protein F52H3.7a protein.
Length = 1245
Score = 29.5 bits (63), Expect = 5.7
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 384 LLAETLSQGSQSDPVGDVL--SPLEKINLQNTSTLGRVVQAEAPSTTEDSTLKQYRDAIL 441
L E + + S+PV DV +E +++ + V+ APS + + +++++DA
Sbjct: 581 LAEEHKDEAAPSEPVQDVPVEEVIEAVHIAPAESAPASVEEAAPSESTQAPVEEHKDATT 640
Query: 442 FNDNMEELPLSGNHNP 457
D+ E P + + P
Sbjct: 641 AADSSHEEPKAESDAP 656
>AF239999-1|AAF63495.1| 203|Caenorhabditis elegans MDF-2 protein.
Length = 203
Score = 29.5 bits (63), Expect = 5.7
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 1 MKQLTVIAVSTVTYLKNVFPEDSYTQETFGGIKLRVLKNKCSDELAQFVSTALTQAFEAF 60
+K+ ++++ Y + ++P DS+ +E G+ L V K +L F+ L Q
Sbjct: 19 VKEFFHFGLNSILYQRALYPSDSFKREKKYGLTLWVAHEK---KLQAFMDPLLQQVEYWL 75
Query: 61 DKKYLHQLALCFYEGECKVENLIEYHIFE 89
K+ L +L + E K + ++E F+
Sbjct: 76 AKRQLKRLVMVI--SEVKTKEVVERWQFD 102
>AC084158-32|AAM15619.1| 116|Caenorhabditis elegans Mad (yeast
mitosis arrest deficient)related protein 2, isoform b
protein.
Length = 116
Score = 29.5 bits (63), Expect = 5.7
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 1 MKQLTVIAVSTVTYLKNVFPEDSYTQETFGGIKLRVLKNKCSDELAQFVSTALTQAFEAF 60
+K+ ++++ Y + ++P DS+ +E G+ L V K +L F+ L Q
Sbjct: 19 VKEFFHFGLNSILYQRALYPSDSFKREKKYGLTLWVAHEK---KLQAFMDPLLQQVEYWL 75
Query: 61 DKKYLHQLALCFYEGECKVENLIEYHIFE 89
K+ L +L + E K + ++E F+
Sbjct: 76 AKRQLKRLVMVI--SEVKTKEVVERWQFD 102
>AC084158-31|AAK68576.1| 203|Caenorhabditis elegans Mad (yeast
mitosis arrest deficient)related protein 2, isoform a
protein.
Length = 203
Score = 29.5 bits (63), Expect = 5.7
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 1 MKQLTVIAVSTVTYLKNVFPEDSYTQETFGGIKLRVLKNKCSDELAQFVSTALTQAFEAF 60
+K+ ++++ Y + ++P DS+ +E G+ L V K +L F+ L Q
Sbjct: 19 VKEFFHFGLNSILYQRALYPSDSFKREKKYGLTLWVAHEK---KLQAFMDPLLQQVEYWL 75
Query: 61 DKKYLHQLALCFYEGECKVENLIEYHIFE 89
K+ L +L + E K + ++E F+
Sbjct: 76 AKRQLKRLVMVI--SEVKTKEVVERWQFD 102
>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical
protein T12D8.1 protein.
Length = 2561
Score = 29.1 bits (62), Expect = 7.5
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 231 RCP-CNKQDADDAGLLTCGYCKKSQHAACFGV 261
+CP C + + L+ C C K QH AC G+
Sbjct: 640 KCPRCERNYQLNEKLIRCSQCSKWQHGACEGL 671
>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical
protein T12D8.1 protein.
Length = 2561
Score = 29.1 bits (62), Expect = 7.5
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 231 RCP-CNKQDADDAGLLTCGYCKKSQHAACFGV 261
+CP C + + L+ C C K QH AC G+
Sbjct: 640 KCPRCERNYQLNEKLIRCSQCSKWQHGACEGL 671
>Z78542-5|CAB01748.1| 915|Caenorhabditis elegans Hypothetical
protein F20D1.6 protein.
Length = 915
Score = 29.1 bits (62), Expect = 7.5
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 322 ELADRFQLSPLNALKLMKLLHSHGVIEDPGTDLATPRQIIKDELKNVMSKFFKTNES--N 379
EL + FQ +N+ +K+ H ED GT+ P ++K + + ++ NES +
Sbjct: 353 ELPNAFQKLTINSASEVKI-GKHAETEDSGTNGPMPPALMKSWVNFIFNEAESDNESLAH 411
Query: 380 IVERLLAETLSQGSQSD 396
+ L A ++S+ SD
Sbjct: 412 ELNMLNAASMSENQLSD 428
>Z83227-2|CAB05727.1| 270|Caenorhabditis elegans Hypothetical
protein F45B8.2 protein.
Length = 270
Score = 28.7 bits (61), Expect = 9.9
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 116 SFDNVRERTIHLIRACVVIMQACQNELPSTYDV 148
S N R I+++R+ V +M + NELPS+ DV
Sbjct: 97 SNQNAVSRVINILRSKVHLMFSSSNELPSSEDV 129
>U53332-2|AAK31532.1| 473|Caenorhabditis elegans Tetraspanin family
protein 18 protein.
Length = 473
Score = 28.7 bits (61), Expect = 9.9
Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 388 TLSQGSQSDPVGDVLSPLEKINLQNTSTLGRVVQAEAPSTTEDSTLKQYRDAILFNDNME 447
T ++ + + +P+ N T T +V + + ST + D +L +D+ +
Sbjct: 350 TTAETEHTATMNSTTAPVTTTNTAET-TDATLVSTSTSNIGKLSTSRD--DGVLSSDSND 406
Query: 448 ELPLSGNHNPIQDMTNIGKRTTKRKSTDKAKRPGVKTK 485
+L +P++ + RKST+ ++P V K
Sbjct: 407 KLTKKSTEHPMKKEKQTKNKVQLRKSTETKQKPNVVAK 444
>U40952-2|AAA81737.1| 818|Caenorhabditis elegans Hypothetical
protein C03B1.7 protein.
Length = 818
Score = 28.7 bits (61), Expect = 9.9
Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 1/120 (0%)
Query: 361 IKDELKNVMSKFFKTNESNIVERLLAETLSQGSQSDPVGDVLSPLEKINLQNTSTLGRVV 420
+K ++ F E N L ++ + D G LS +K +N + G V
Sbjct: 456 VKPTVREHSGANFLQRERNFPLSLKTTVIANSPEGDIEGKRLSKGQKRRARNKANKGVYV 515
Query: 421 QAEAPSTTEDSTLKQYRDAILF-NDNMEELPLSGNHNPIQDMTNIGKRTTKRKSTDKAKR 479
E S + + +Y+ L N ++E P+ H D T G + ++ K K+
Sbjct: 516 VNENGSHSIELLPGEYKLLELDENKKIQEFPIDTRHYMRDDQTGGGSKIVEQGQRTKKKK 575
>DQ178635-1|ABD75714.1| 361|Caenorhabditis elegans tetraspanin
family protein protein.
Length = 361
Score = 28.7 bits (61), Expect = 9.9
Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 388 TLSQGSQSDPVGDVLSPLEKINLQNTSTLGRVVQAEAPSTTEDSTLKQYRDAILFNDNME 447
T ++ + + +P+ N T T +V + + ST + D +L +D+ +
Sbjct: 238 TTAETEHTATMNSTTAPVTTTNTAET-TDATLVSTSTSNIGKLSTSRD--DGVLSSDSND 294
Query: 448 ELPLSGNHNPIQDMTNIGKRTTKRKSTDKAKRPGVKTK 485
+L +P++ + RKST+ ++P V K
Sbjct: 295 KLTKKSTEHPMKKEKQTKNKVQLRKSTETKQKPNVVAK 332
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.316 0.131 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,249,831
Number of Sequences: 27539
Number of extensions: 449015
Number of successful extensions: 1380
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1355
Number of HSP's gapped (non-prelim): 47
length of query: 494
length of database: 12,573,161
effective HSP length: 84
effective length of query: 410
effective length of database: 10,259,885
effective search space: 4206552850
effective search space used: 4206552850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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