GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001062-TA|BGIBMGA001062-PA|IPR004910|Yippee-like protein
         (121 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    77   6e-16
SPBC216.04c |||methionine sulfoxide |Schizosaccharomyces pombe|c...    27   1.1  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   3.3  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    24   7.6  

>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 77.4 bits (182), Expect = 6e-16
 Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 1/102 (0%)

Query: 1   MGKIFLDHIGGTRLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQDRV 60
           MG+ +  H+  +R + CA C  +L  +  L+S  + G  G A LF +V N+I  E +   
Sbjct: 1   MGRYYPVHLK-SRCYVCAKCKTHLAFKGHLLSHDYRGKNGPACLFKRVENVIEMEPKTEQ 59

Query: 61  MLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILE 102
           M TGR +VR + C  C T +GW Y  + E +Q++K+G  ILE
Sbjct: 60  MSTGRFIVRHIHCCRCHTYIGWKYVSSYEPSQKFKDGHYILE 101


>SPBC216.04c |||methionine sulfoxide |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 138

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 8/72 (11%)

Query: 14  LFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQDRVMLTGRHMVRDVSC 73
           +F CA+C   L   S    T+F    G    F  +   +   ++D     G H V  V C
Sbjct: 46  VFVCAACKELLYKAS----TKFESHCGWPAFFDNLPGKV-KRIEDNSY--GMHRVEAV-C 97

Query: 74  KNCGTKLGWVYE 85
            NCG  LG +++
Sbjct: 98  ANCGGHLGHIFK 109


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 17/86 (19%), Positives = 37/86 (43%)

Query: 30  LISTRFTGATGRAFLFHKVVNLIYSEVQDRVMLTGRHMVRDVSCKNCGTKLGWVYEFATE 89
           LI ++F     +A  F +    + S++   +    R+   D +      K  W ++   E
Sbjct: 539 LIQSKFDVLDKKAVSFLENEGYLESQISTELFANLRYEGNDTTMMIAKPKDSWDFKTLFE 598

Query: 90  ENQRYKEGRVILERALVTESDGIEEI 115
           E+ + + G  +++R ++ E   I  I
Sbjct: 599 ESYKNQFGFSLIDRKIMVEDIRIRAI 624


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 137

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 71 VSCKNCGTKLGWVY 84
          + CKNCGT L + Y
Sbjct: 69 IFCKNCGTTLYFAY 82


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.138    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 493,340
Number of Sequences: 5004
Number of extensions: 17222
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 4
length of query: 121
length of database: 2,362,478
effective HSP length: 65
effective length of query: 56
effective length of database: 2,037,218
effective search space: 114084208
effective search space used: 114084208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)