Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001062-TA|BGIBMGA001062-PA|IPR004910|Yippee-like protein
(121 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1056 + 23619815-23619957,23621080-23621188,23622555-23622635 99 8e-22
12_02_0358 - 17948460-17948687,17949442-17949534 95 1e-20
10_06_0133 - 11081169-11081252,11082857-11082965,11083865-11084031 87 3e-18
11_06_0058 - 19688221-19688448,19688899-19688949,19689061-19689153 78 2e-15
03_05_0798 + 27798095-27798190,27798325-27798366,27799152-277991... 44 3e-05
11_01_0316 + 2361904-2362237,2362454-2363178 30 0.58
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 29 1.3
01_04_0017 - 15113479-15113580,15113950-15114117,15115011-151152... 28 2.3
12_01_0418 - 3304741-3304904,3305579-3305762,3307254-3307347,330... 27 3.1
07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149 27 3.1
10_08_0604 + 19152363-19152731,19152773-19153514,19153926-191540... 27 5.4
05_06_0119 + 25742277-25742434,25742976-25743061,25743146-257432... 26 9.4
03_05_0517 - 25118232-25118730,25119002-25119273 26 9.4
>07_03_1056 + 23619815-23619957,23621080-23621188,23622555-23622635
Length = 110
Score = 99.1 bits (236), Expect = 8e-22
Identities = 43/106 (40%), Positives = 66/106 (62%)
Query: 1 MGKIFLDHIGGTRLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQDRV 60
MG +F++ + G ++F C C V+ + ++S F G GRA+LF VVN+ +DR+
Sbjct: 1 MGLLFVESLPGPKVFKCKFCGVDSASPDAIVSKEFRGRHGRAYLFDSVVNVSLGPREDRL 60
Query: 61 MLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERALV 106
++TG H V D+ C C LGW YE A E+Q+YKEG+ ILE+ ++
Sbjct: 61 LMTGLHTVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEKHMM 106
>12_02_0358 - 17948460-17948687,17949442-17949534
Length = 106
Score = 95.5 bits (227), Expect = 1e-20
Identities = 40/100 (40%), Positives = 62/100 (62%)
Query: 11 GTRLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQDRVMLTGRHMVRD 70
G R++SC +C ++ ++IS F G GRAFLF +N++ +DR ++TG H V D
Sbjct: 6 GPRVYSCCNCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVVVGAKEDRQLMTGLHTVAD 65
Query: 71 VSCKNCGTKLGWVYEFATEENQRYKEGRVILERALVTESD 110
+ C +C LGW YE A EE Q+YKEG+ I E++ + + +
Sbjct: 66 IYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKIVKEN 105
>10_06_0133 - 11081169-11081252,11082857-11082965,11083865-11084031
Length = 119
Score = 87.4 bits (207), Expect = 3e-18
Identities = 39/91 (42%), Positives = 56/91 (61%)
Query: 14 LFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQDRVMLTGRHMVRDVSC 73
+ C C V+ + ++S F G GRA+LF VVN+ +DR ++TG H V+D+ C
Sbjct: 22 VLKCRRCRVDAASADAILSRDFRGRFGRAYLFDHVVNISLGPNEDRYLMTGLHTVKDIYC 81
Query: 74 KNCGTKLGWVYEFATEENQRYKEGRVILERA 104
C LGW YE A EE+++YKEG+ ILE+A
Sbjct: 82 SCCQQILGWRYEKAYEESEKYKEGKFILEKA 112
>11_06_0058 - 19688221-19688448,19688899-19688949,19689061-19689153
Length = 123
Score = 78.2 bits (184), Expect = 2e-15
Identities = 33/74 (44%), Positives = 48/74 (64%)
Query: 37 GATGRAFLFHKVVNLIYSEVQDRVMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKE 96
G GRAFLF +N+ +DR ++TG H V D+ C++C LGW YE A EE+Q+YKE
Sbjct: 49 GRNGRAFLFSHAMNISMGPKEDRQLMTGLHTVADIYCRDCREVLGWKYERAFEESQKYKE 108
Query: 97 GRVILERALVTESD 110
G+ I E+A + + +
Sbjct: 109 GKFIFEKAKIVKEN 122
>03_05_0798 +
27798095-27798190,27798325-27798366,27799152-27799190,
27799238-27799420
Length = 119
Score = 44.0 bits (99), Expect = 3e-05
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 1 MGKIFLDHIGGTRLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEV 56
MG++F+ H+ G +++SC C +L S++IS F G+A+LF+K+ L Y+ V
Sbjct: 1 MGRLFVMHLEG-KVYSCKHCHTHLGLSSDIISKSFHCKHGKAYLFNKLKLLAYNTV 55
>11_01_0316 + 2361904-2362237,2362454-2363178
Length = 352
Score = 29.9 bits (64), Expect = 0.58
Identities = 19/87 (21%), Positives = 30/87 (34%)
Query: 34 RFTGATGRAFLFHKVVNLIYSEVQDRVMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQR 93
RF G G AF FH + + V DR + H + W+ A +
Sbjct: 123 RFIGGDGNAFYFHGRRDADFCVVSDRDLHINAHFIGKRGADGMSRDFTWIQAIAVLFDDG 182
Query: 94 YKEGRVILERALVTESDGIEEIQVNVD 120
+ R D ++ ++V VD
Sbjct: 183 GAHRLYVGARKTAAWDDDVDRLEVIVD 209
>06_03_0867 +
25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 71 VSCKNCGTKLGWVYEFATEENQRYKEGRVILERALVTESDGIEEIQVN 118
+S +CG L + E + +E+ + KE RV +E + S G E+IQVN
Sbjct: 757 MSLNSCGG-LNYT-EVSEKEDIQEKEDRVPMESIVACTSSGNEDIQVN 802
>01_04_0017 -
15113479-15113580,15113950-15114117,15115011-15115229,
15115303-15115446,15115558-15115840,15115936-15115991,
15116067-15116216,15116299-15116385,15116463-15116498,
15116746-15116808,15116887-15116967,15117053-15117142,
15117349-15117426,15117510-15117731,15117788-15117835,
15117948-15118133,15120910-15121009,15121107-15121246
Length = 750
Score = 27.9 bits (59), Expect = 2.3
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 12 TRLFSCASCDVNLTNRS---ELISTRFTGATGRAFLFHKVVNLIYSEVQDRVMLTGRHMV 68
T ++S +C++N + ELI T + A LF+ V L YSE+ ++ L+ +V
Sbjct: 561 TWIYSLGTCNINAKFEAKTIELIVTTYQAAL--LLLFNGVDRLSYSEIVTQLNLSDDDVV 618
Query: 69 RDVSCKNC 76
R + +C
Sbjct: 619 RLLHSLSC 626
>12_01_0418 -
3304741-3304904,3305579-3305762,3307254-3307347,
3308530-3308882,3309140-3309274,3309354-3309392,
3309587-3309652,3309739-3309834,3310291-3310527,
3310602-3310722,3310854-3310889,3313062-3313159,
3313298-3313591,3313842-3313904,3314280-3314438,
3314557-3314655
Length = 745
Score = 27.5 bits (58), Expect = 3.1
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 22 VNLTNRSELISTRFTGATGRAFLFHKVVNLI--YSEVQDR 59
+N+TN ++++ + AT RA+++ K +LI Y VQ R
Sbjct: 706 INITNMKQVLAPEMSLATVRAYVWKKPEDLILNYKVVQSR 745
>07_03_1707 +
28866054-28866065,28866185-28866269,28866398-28867149
Length = 282
Score = 27.5 bits (58), Expect = 3.1
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 47 KVVNLIYSEVQDRVMLTG----RHMVRDVSCKNCG 77
K++N++Y +RV+++G + + CK CG
Sbjct: 36 KIINIVYENSNNRVIISGHFKPEELAHKLRCKACG 70
>10_08_0604 +
19152363-19152731,19152773-19153514,19153926-19154005,
19154155-19154487
Length = 507
Score = 26.6 bits (56), Expect = 5.4
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 65 RHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILER 103
RHMVRDV G V FA EE R + ++ R
Sbjct: 339 RHMVRDVMLGGAHVARGNVVSFAIEEIGRRQHENILKAR 377
>05_06_0119 +
25742277-25742434,25742976-25743061,25743146-25743223,
25743919-25744031,25744094-25744171,25744941-25744949,
25744981-25745082,25745165-25745714,25745941-25746146,
25746868-25747031,25747157-25747310
Length = 565
Score = 25.8 bits (54), Expect = 9.4
Identities = 9/22 (40%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 72 SCKNCGTKLGWVYEFATEENQR 93
SC +C + +GW+++ AT++N R
Sbjct: 522 SCTDCESNIGWLFK-ATKKNLR 542
>03_05_0517 - 25118232-25118730,25119002-25119273
Length = 256
Score = 25.8 bits (54), Expect = 9.4
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 8/39 (20%)
Query: 87 ATEENQRYKEGRVI--------LERALVTESDGIEEIQV 117
A E++R +EGR+I LER L ES GI++I V
Sbjct: 127 ARSESRRPREGRIIKEGRRPGQLERGLRAESKGIKDIGV 165
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.138 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,211,253
Number of Sequences: 37544
Number of extensions: 110715
Number of successful extensions: 251
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 243
Number of HSP's gapped (non-prelim): 13
length of query: 121
length of database: 14,793,348
effective HSP length: 74
effective length of query: 47
effective length of database: 12,015,092
effective search space: 564709324
effective search space used: 564709324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)
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