BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001062-TA|BGIBMGA001062-PA|IPR004910|Yippee-like protein (121 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_03_1056 + 23619815-23619957,23621080-23621188,23622555-23622635 99 8e-22 12_02_0358 - 17948460-17948687,17949442-17949534 95 1e-20 10_06_0133 - 11081169-11081252,11082857-11082965,11083865-11084031 87 3e-18 11_06_0058 - 19688221-19688448,19688899-19688949,19689061-19689153 78 2e-15 03_05_0798 + 27798095-27798190,27798325-27798366,27799152-277991... 44 3e-05 11_01_0316 + 2361904-2362237,2362454-2363178 30 0.58 06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 29 1.3 01_04_0017 - 15113479-15113580,15113950-15114117,15115011-151152... 28 2.3 12_01_0418 - 3304741-3304904,3305579-3305762,3307254-3307347,330... 27 3.1 07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149 27 3.1 10_08_0604 + 19152363-19152731,19152773-19153514,19153926-191540... 27 5.4 05_06_0119 + 25742277-25742434,25742976-25743061,25743146-257432... 26 9.4 03_05_0517 - 25118232-25118730,25119002-25119273 26 9.4 >07_03_1056 + 23619815-23619957,23621080-23621188,23622555-23622635 Length = 110 Score = 99.1 bits (236), Expect = 8e-22 Identities = 43/106 (40%), Positives = 66/106 (62%) Query: 1 MGKIFLDHIGGTRLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQDRV 60 MG +F++ + G ++F C C V+ + ++S F G GRA+LF VVN+ +DR+ Sbjct: 1 MGLLFVESLPGPKVFKCKFCGVDSASPDAIVSKEFRGRHGRAYLFDSVVNVSLGPREDRL 60 Query: 61 MLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERALV 106 ++TG H V D+ C C LGW YE A E+Q+YKEG+ ILE+ ++ Sbjct: 61 LMTGLHTVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEKHMM 106 >12_02_0358 - 17948460-17948687,17949442-17949534 Length = 106 Score = 95.5 bits (227), Expect = 1e-20 Identities = 40/100 (40%), Positives = 62/100 (62%) Query: 11 GTRLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQDRVMLTGRHMVRD 70 G R++SC +C ++ ++IS F G GRAFLF +N++ +DR ++TG H V D Sbjct: 6 GPRVYSCCNCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVVVGAKEDRQLMTGLHTVAD 65 Query: 71 VSCKNCGTKLGWVYEFATEENQRYKEGRVILERALVTESD 110 + C +C LGW YE A EE Q+YKEG+ I E++ + + + Sbjct: 66 IYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKIVKEN 105 >10_06_0133 - 11081169-11081252,11082857-11082965,11083865-11084031 Length = 119 Score = 87.4 bits (207), Expect = 3e-18 Identities = 39/91 (42%), Positives = 56/91 (61%) Query: 14 LFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQDRVMLTGRHMVRDVSC 73 + C C V+ + ++S F G GRA+LF VVN+ +DR ++TG H V+D+ C Sbjct: 22 VLKCRRCRVDAASADAILSRDFRGRFGRAYLFDHVVNISLGPNEDRYLMTGLHTVKDIYC 81 Query: 74 KNCGTKLGWVYEFATEENQRYKEGRVILERA 104 C LGW YE A EE+++YKEG+ ILE+A Sbjct: 82 SCCQQILGWRYEKAYEESEKYKEGKFILEKA 112 >11_06_0058 - 19688221-19688448,19688899-19688949,19689061-19689153 Length = 123 Score = 78.2 bits (184), Expect = 2e-15 Identities = 33/74 (44%), Positives = 48/74 (64%) Query: 37 GATGRAFLFHKVVNLIYSEVQDRVMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKE 96 G GRAFLF +N+ +DR ++TG H V D+ C++C LGW YE A EE+Q+YKE Sbjct: 49 GRNGRAFLFSHAMNISMGPKEDRQLMTGLHTVADIYCRDCREVLGWKYERAFEESQKYKE 108 Query: 97 GRVILERALVTESD 110 G+ I E+A + + + Sbjct: 109 GKFIFEKAKIVKEN 122 >03_05_0798 + 27798095-27798190,27798325-27798366,27799152-27799190, 27799238-27799420 Length = 119 Score = 44.0 bits (99), Expect = 3e-05 Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%) Query: 1 MGKIFLDHIGGTRLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEV 56 MG++F+ H+ G +++SC C +L S++IS F G+A+LF+K+ L Y+ V Sbjct: 1 MGRLFVMHLEG-KVYSCKHCHTHLGLSSDIISKSFHCKHGKAYLFNKLKLLAYNTV 55 >11_01_0316 + 2361904-2362237,2362454-2363178 Length = 352 Score = 29.9 bits (64), Expect = 0.58 Identities = 19/87 (21%), Positives = 30/87 (34%) Query: 34 RFTGATGRAFLFHKVVNLIYSEVQDRVMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQR 93 RF G G AF FH + + V DR + H + W+ A + Sbjct: 123 RFIGGDGNAFYFHGRRDADFCVVSDRDLHINAHFIGKRGADGMSRDFTWIQAIAVLFDDG 182 Query: 94 YKEGRVILERALVTESDGIEEIQVNVD 120 + R D ++ ++V VD Sbjct: 183 GAHRLYVGARKTAAWDDDVDRLEVIVD 209 >06_03_0867 + 25534760-25539620,25540662-25540857,25540957-25541104, 25541673-25541751,25542151-25542238,25542330-25542600, 25542676-25542718,25542801-25542904,25543374-25543790 Length = 2068 Score = 28.7 bits (61), Expect = 1.3 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Query: 71 VSCKNCGTKLGWVYEFATEENQRYKEGRVILERALVTESDGIEEIQVN 118 +S +CG L + E + +E+ + KE RV +E + S G E+IQVN Sbjct: 757 MSLNSCGG-LNYT-EVSEKEDIQEKEDRVPMESIVACTSSGNEDIQVN 802 >01_04_0017 - 15113479-15113580,15113950-15114117,15115011-15115229, 15115303-15115446,15115558-15115840,15115936-15115991, 15116067-15116216,15116299-15116385,15116463-15116498, 15116746-15116808,15116887-15116967,15117053-15117142, 15117349-15117426,15117510-15117731,15117788-15117835, 15117948-15118133,15120910-15121009,15121107-15121246 Length = 750 Score = 27.9 bits (59), Expect = 2.3 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%) Query: 12 TRLFSCASCDVNLTNRS---ELISTRFTGATGRAFLFHKVVNLIYSEVQDRVMLTGRHMV 68 T ++S +C++N + ELI T + A LF+ V L YSE+ ++ L+ +V Sbjct: 561 TWIYSLGTCNINAKFEAKTIELIVTTYQAAL--LLLFNGVDRLSYSEIVTQLNLSDDDVV 618 Query: 69 RDVSCKNC 76 R + +C Sbjct: 619 RLLHSLSC 626 >12_01_0418 - 3304741-3304904,3305579-3305762,3307254-3307347, 3308530-3308882,3309140-3309274,3309354-3309392, 3309587-3309652,3309739-3309834,3310291-3310527, 3310602-3310722,3310854-3310889,3313062-3313159, 3313298-3313591,3313842-3313904,3314280-3314438, 3314557-3314655 Length = 745 Score = 27.5 bits (58), Expect = 3.1 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%) Query: 22 VNLTNRSELISTRFTGATGRAFLFHKVVNLI--YSEVQDR 59 +N+TN ++++ + AT RA+++ K +LI Y VQ R Sbjct: 706 INITNMKQVLAPEMSLATVRAYVWKKPEDLILNYKVVQSR 745 >07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149 Length = 282 Score = 27.5 bits (58), Expect = 3.1 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 4/35 (11%) Query: 47 KVVNLIYSEVQDRVMLTG----RHMVRDVSCKNCG 77 K++N++Y +RV+++G + + CK CG Sbjct: 36 KIINIVYENSNNRVIISGHFKPEELAHKLRCKACG 70 >10_08_0604 + 19152363-19152731,19152773-19153514,19153926-19154005, 19154155-19154487 Length = 507 Score = 26.6 bits (56), Expect = 5.4 Identities = 15/39 (38%), Positives = 18/39 (46%) Query: 65 RHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILER 103 RHMVRDV G V FA EE R + ++ R Sbjct: 339 RHMVRDVMLGGAHVARGNVVSFAIEEIGRRQHENILKAR 377 >05_06_0119 + 25742277-25742434,25742976-25743061,25743146-25743223, 25743919-25744031,25744094-25744171,25744941-25744949, 25744981-25745082,25745165-25745714,25745941-25746146, 25746868-25747031,25747157-25747310 Length = 565 Score = 25.8 bits (54), Expect = 9.4 Identities = 9/22 (40%), Positives = 17/22 (77%), Gaps = 1/22 (4%) Query: 72 SCKNCGTKLGWVYEFATEENQR 93 SC +C + +GW+++ AT++N R Sbjct: 522 SCTDCESNIGWLFK-ATKKNLR 542 >03_05_0517 - 25118232-25118730,25119002-25119273 Length = 256 Score = 25.8 bits (54), Expect = 9.4 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 8/39 (20%) Query: 87 ATEENQRYKEGRVI--------LERALVTESDGIEEIQV 117 A E++R +EGR+I LER L ES GI++I V Sbjct: 127 ARSESRRPREGRIIKEGRRPGQLERGLRAESKGIKDIGV 165 Database: rice Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.323 0.138 0.408 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,211,253 Number of Sequences: 37544 Number of extensions: 110715 Number of successful extensions: 251 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 243 Number of HSP's gapped (non-prelim): 13 length of query: 121 length of database: 14,793,348 effective HSP length: 74 effective length of query: 47 effective length of database: 12,015,092 effective search space: 564709324 effective search space used: 564709324 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.9 bits) S2: 54 (25.8 bits)
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