GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001062-TA|BGIBMGA001062-PA|IPR004910|Yippee-like protein
         (121 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   3.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   6.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   6.8  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
          protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 11 GTRLFSCASCDVNLTNRSELIS 32
          G++ F C  C  +  N+S L S
Sbjct: 13 GSKPFKCEKCSYSCVNKSMLNS 34


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 79  KLGWVYEFATEENQRYKEGR 98
           KL  +++ AT+EN     GR
Sbjct: 357 KLDKIFDIATKENAMLLSGR 376


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 23  NLTNRSELISTRFTGATGR 41
           ++ NRS L+S   T  TGR
Sbjct: 382 SIRNRSGLVSGSSTPGTGR 400


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.138    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,646
Number of Sequences: 429
Number of extensions: 1116
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 121
length of database: 140,377
effective HSP length: 51
effective length of query: 70
effective length of database: 118,498
effective search space:  8294860
effective search space used:  8294860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.0 bits)
S2: 39 (19.8 bits)