Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001061-TA|BGIBMGA001061-PA|IPR005123|2OG-Fe(II)
oxygenase, IPR013216|Methyltransferase type 11
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual        127   5e-30
SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual        46   2e-05
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha...    38   0.005
SPAC25B8.09 |||trans-aconitate 3-methyltransferase |Schizosaccha...    36   0.021
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta...    29   1.8  
SPBC800.07c |tsf1||mitochondrial translation elongation factor E...    28   3.2  
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    28   4.2  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    27   7.4  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    27   7.4  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   7.4  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    27   9.7  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   9.7  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   9.7  

>SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score =  127 bits (306), Expect = 5e-30
 Identities = 79/242 (32%), Positives = 125/242 (51%), Gaps = 20/242 (8%)

Query: 352 EDIHVHQVYEQIAGHFSTTRHKPWPKVVDFMQHVPAGSIVLDLGCGNGKNILNRTDILQV 411
           E+ +VHQVY++IA HFS TR+KPWP V  F++ +P GS+ +D+GCGNGK      ++  +
Sbjct: 6   ENEYVHQVYDKIATHFSDTRYKPWPVVEKFLKSLPLGSVGVDIGCGNGKYQKVNPNVYMI 65

Query: 412 AGERSSGLLEECKGLTARISGADCIRLDLLNTGLKDECADFIICVAVVHHFSTQARRLHS 471
             +R   L++    L   +        D L+        DF + +AV+HHFS + RRL +
Sbjct: 66  GSDRCVKLVKIASNLGPMVIS------DGLHVPHPSNRFDFALSIAVIHHFSNENRRLQA 119

Query: 472 LQTIHRLLRTNGQALITVWAKDQTKSSYLSRTRAPLLDRHKLTVVGIHLPVHENRTQFQH 531
           +Q + R L   G+AL  VWA +Q  S        P           +++P    R Q+++
Sbjct: 120 VQEVLRPLVKGGKALFFVWALEQKNSRRGFSEDGP---------QDVYVPWILKR-QYEY 169

Query: 532 KDLLVPWNLRSKAPPLQQPDTTFLRYYHVFDEGELDQLCRDARLAIVRSFYEEGNWCVVC 591
            +   P  L+   P     +  + RYYH+F +GEL++L   A  +I+   Y+  NW V+ 
Sbjct: 170 PN-AKPEELKGHDP---AENIAYQRYYHLFRKGELNELVETAGGSILEHGYDRDNWWVIA 225

Query: 592 MK 593
            K
Sbjct: 226 EK 227


>SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 36/105 (34%), Positives = 49/105 (46%), Gaps = 12/105 (11%)

Query: 214 YLPGQGIPSHVDKHSPFGETILALSLGSNVVMDWKHHTGKYVP-VMVEARSMMIMQDEAR 272
           Y PG GI  H D    FG+ +   S  SN  M + H   K    + +E  S+++M   AR
Sbjct: 123 YNPGDGIIPHKDLEM-FGDGVAIFSFLSNTTMIFTHPELKLKSKIRLEKGSLLLMSGTAR 181

Query: 273 YDWQHGIQPRMWDPVLDVRLIDNEKVKVITSDTVQREMRISLTFR 317
           YDW H I  R  D V++    D E+        V R  R+S+T R
Sbjct: 182 YDWFHEIPFRAGDWVMN----DGEE------KWVSRSQRLSVTMR 216


>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 12/111 (10%)

Query: 389 SIVLDLGCGNGK---NILNRTDILQVAGERSSGLLEECKGLTARISGADCIRLDLLNTGL 445
           SI+L+LG G GK    I+       +A +    +L+    L  +    DC     +   L
Sbjct: 42  SIILELGAGTGKFTPRIIASHPKEIIAVDVYPEMLDV---LRKKFPNVDCRAGSAMAIPL 98

Query: 446 KDECADFIICVAVVHHFSTQARRLHSLQTIHRLLRTNGQALITVW-AKDQT 495
           +DE  D ++C    H F+ +     +++ I+R+L+ NG+ L  VW  +D T
Sbjct: 99  EDESVDLVLCAQCFHWFANE----EAMKEIYRVLKPNGK-LGLVWNTRDDT 144


>SPAC25B8.09 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 35.5 bits (78), Expect = 0.021
 Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 12/129 (9%)

Query: 367 FSTTRHKPWPKVVDFMQH---VPAGSIVLDLGCGNGKNILNRTDILQVAGE--RSSGLLE 421
           + T R    P++ +++     V   S +L+LG G+GK  L    I     E       +E
Sbjct: 13  YETARPDYPPQITEWLNDEFSVNETSTILELGAGSGK--LTPRIIASQPKEIIAVDTYVE 70

Query: 422 ECKGLTARISGADCIRLDLLNTGLKDECADFIICVAVVHHFSTQARRLHSLQTIHRLLRT 481
               L  +    DC     +   L+DE  D + C    H F+ +     +L+ I+R+L+ 
Sbjct: 71  MLDVLKKKFPNVDCRVGSAMAIPLEDESVDLVACGQCFHWFANE----EALKEIYRVLKP 126

Query: 482 NGQALITVW 490
           NG+ L  +W
Sbjct: 127 NGK-LALIW 134


>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
          Taf4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 19 NTLKGIVCYEDPRPNVILCNVGQATGFDKQK 49
          N+  G + Y  PRPN +  +VG A+G D+Q+
Sbjct: 47 NSGPGKLHYASPRPNNVSSSVGVASGGDRQE 77


>SPBC800.07c |tsf1||mitochondrial translation elongation factor
           EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 152 VETTLKNRQVKHYGYEFR-YGSNDVDLS--CPLQEKIPKICKLLWRRLQ 197
           VE TLKN  +KH  Y  + + +N+ D+S    L+E+I K+      ++Q
Sbjct: 148 VEATLKNEILKHQAYVSKNHEANEKDVSSNVSLEEEIVKMTSFTGEKVQ 196


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 383 QHVPAGSIVLDLGCGNG 399
           +H+ AG  VLD+GCG G
Sbjct: 251 KHIFAGKTVLDVGCGTG 267


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 475 IHRLLRTNGQALITVWAKDQTKSSYLS 501
           + ++LRTNG    T+W +D+ +  Y S
Sbjct: 235 VTKVLRTNGGRWPTIWGEDKPRCLYTS 261


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 272 RYDWQHGIQPRMWDPVLDVRLIDNEKVKVITSDTVQREMRISLTFRWT-RCGPCKCEYKM 330
           ++D  H +Q   WDP L+  ++     + I    +Q E +    F+   +   C+ EY +
Sbjct: 166 KFDHSHYVQGVCWDP-LNQYIVSESSDRSICLYEIQEEKKNPKKFQLVLKSRICRIEYNV 224

Query: 331 LCDSIERNIPETISNDVASNIED 353
               +  ++ + ++ND +S I +
Sbjct: 225 TKFEL-ISVTKPLNNDESSGISE 246


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 133 DFLTEDEEKLFLNTFNIQHVETTLKN 158
           DF TED ++LFL  FN   + T L+N
Sbjct: 124 DFSTEDLKQLFLLIFNNGKLRTLLQN 149


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 250 HTGKYVPVMVEARSMMIMQDEARYDWQHGIQPRMWDPVLDVRLIDNEKVKVITSDTVQ-- 307
           HT K  P+  + +  +   +E   D      PR    ++D  L D ++++ +TS+  +  
Sbjct: 184 HTVKQKPLREKKKKPLKSSEEISKDMGSYNLPRFLASLIDASLNDTKEIEFVTSNKEELG 243

Query: 308 ---REMRISLTFRWTRCGPCKCEY 328
              R+M  S   + +R    +CE+
Sbjct: 244 LEGRDMSTSGINQLSRLARVECEH 267


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 54  LTEYKVNTPLPKFVAEKGESYSYLMFDKAENASLFYEACN 93
           L E  V TPL +FV    +   +L+F  + N + + ++ N
Sbjct: 489 LHEVAVGTPLQQFVHNLSQKLLFLVFQLSTNTNCYLDSKN 528


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 137  EDEEKLFLNTFNIQHVETTLKNRQVKHYGYEFRYGSNDVDLSCP 180
            E+E+KL +N  + + +   L  R +  +G    YG+N +  S P
Sbjct: 1797 EEEQKLPVNEQSERFLSGELVTRIINEFGRSLYYGTNHIYESMP 1840


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.138    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,641
Number of Sequences: 5004
Number of extensions: 129424
Number of successful extensions: 322
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 14
length of query: 594
length of database: 2,362,478
effective HSP length: 77
effective length of query: 517
effective length of database: 1,977,170
effective search space: 1022196890
effective search space used: 1022196890
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)