Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001061-TA|BGIBMGA001061-PA|IPR005123|2OG-Fe(II)
oxygenase, IPR013216|Methyltransferase type 11
(594 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0761 - 31550936-31551020,31551641-31552666,31553083-315531... 122 1e-27
04_04_1056 - 30447791-30447850,30448020-30448085,30448299-304485... 97 3e-20
11_06_0608 - 25442883-25443206,25443420-25443623,25443831-254438... 40 0.007
08_01_0538 - 4670159-4670251,4670332-4670393,4670476-4670599,467... 35 0.16
10_08_0028 - 14262607-14262783,14262886-14262932,14263014-142632... 33 0.64
08_02_0567 + 18769742-18769790,18769928-18771351 31 2.0
06_01_0275 + 2029542-2029689,2029777-2030295,2030657-2030754,203... 31 3.4
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 31 3.4
01_05_0705 + 24424457-24424948,24425520-24425624,24426097-244262... 30 4.5
07_03_0511 - 18911673-18911713,18922395-18923361,18926841-189276... 29 7.9
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 29 7.9
>02_05_0761 -
31550936-31551020,31551641-31552666,31553083-31553117,
31554921-31555039,31555215-31555331,31556131-31556205,
31556885-31557017
Length = 529
Score = 122 bits (293), Expect = 1e-27
Identities = 63/162 (38%), Positives = 95/162 (58%), Gaps = 6/162 (3%)
Query: 350 NIEDIHVHQVYEQIAGHFSTTRHKPWPKVVDFMQHVPAGSIVLDLGCGNGKNILNRTDIL 409
+IE +VH+VY+ IA HFS+TR WPKV F+ + GS++LD GCGNGK + D L
Sbjct: 226 DIEKKYVHRVYDAIAPHFSSTRFAKWPKVAGFLNSLRPGSVILDAGCGNGKYLGFNPDCL 285
Query: 410 QVAGERSSGLLEECKGLTARISGADCIRLDLLNTGLKDECADFIICVAVVHHFSTQARRL 469
+ + S L++ C G G + + D +N +D D I +AV+HH ST ARR
Sbjct: 286 FIGCDISPPLIDICAG-----RGHEVLVADAVNLPYRDNFGDAAISIAVLHHLSTDARRR 340
Query: 470 HSLQTIHRLLRTNGQALITVWAKDQTKSSYLSRTRAPLLDRH 511
+++ + R++R G LITVWA +Q S L++ PL +++
Sbjct: 341 KAIEELIRVVRKGGLVLITVWAVEQEDKSLLNKW-TPLCEKY 381
Score = 45.2 bits (102), Expect = 1e-04
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 556 RYYHVFDEGELDQLCRDARLA-IVRSFYEEGNWCVVCMKV 594
RYYHVF EGEL +L A +V FY++ NWC+V K+
Sbjct: 490 RYYHVFVEGELQRLVAGINNAVVVDQFYDKSNWCIVLEKL 529
>04_04_1056 -
30447791-30447850,30448020-30448085,30448299-30448583,
30448744-30448869,30449068-30449154,30449273-30449695
Length = 348
Score = 97.5 bits (232), Expect = 3e-20
Identities = 78/233 (33%), Positives = 114/233 (48%), Gaps = 39/233 (16%)
Query: 127 GLHIIPDFLTEDEEKLFLNTFNIQHVETTLKNRQVKHYGYEFRYGSNDVDLSCPLQEKIP 186
G++++PDF+T EE+ L + + ++ K R+V+HYG+EF Y + +VD L E P
Sbjct: 127 GIYLVPDFVTAAEEQELLAAVDNRPWKSLAK-RRVQHYGFEFLYETRNVDSKQFLGELPP 185
Query: 187 KICKLLWRRLQHYGYDLGVPV---QLTVNKYLPGQGIPSHVDKHSPFGETILALSLGSNV 243
+ K++ + + G + QLTVN+Y G G+ H+D HS F E I +LSL
Sbjct: 186 FVSKIIDKIMSFPGANKCTSKLVDQLTVNEYPCGVGLSPHIDTHSAFEEMIFSLSLAGPC 245
Query: 244 VMDW-KHHTGKY-VPVMVEA--------------------RSMMIMQDEARYDWQHGIQP 281
+M++ K+ G + P MV RSM++M E RY W H I P
Sbjct: 246 IMEFRKYPKGSWRAPSMVSGTDKDSIEEPQCIRKAVFLPPRSMLLMSGEGRYAWHHYI-P 304
Query: 282 RMWDPVLDVRLIDNEKVKVITSDTVQREMRISLTFRWTRCGPCKCEYKMLCDS 334
ID+ +VI +T R+S TFR R G C CEY CDS
Sbjct: 305 H--------HKIDDVGGQVIKRNT----RRVSFTFRKVRMGLCDCEYGQFCDS 345
>11_06_0608 -
25442883-25443206,25443420-25443623,25443831-25443859,
25444335-25444557
Length = 259
Score = 39.5 bits (88), Expect = 0.007
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 208 QLTVNKYLPGQGIPSHVDKHSPFGETILALSLGSNVVMDWK---------------HHTG 252
Q+ N+Y PG+GI +HVD F + I +SL S VM + H
Sbjct: 142 QMIANRYEPGEGICAHVDL-MRFDDGIAIVSLESPCVMHFSRAEQEVPICETLESVHAEP 200
Query: 253 KYVPVMVEARSMMIMQDEARYDWQHGI 279
+PV + S+++M +ARY W+H I
Sbjct: 201 TKIPVYLNPGSLVLMSGDARYLWKHEI 227
>08_01_0538 -
4670159-4670251,4670332-4670393,4670476-4670599,
4670797-4670859,4671483-4671533,4671627-4671691,
4671797-4671935,4672332-4672388,4672729-4672827,
4673266-4673337,4673426-4673494,4673617-4673762,
4673881-4674157
Length = 438
Score = 35.1 bits (77), Expect = 0.16
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 19/128 (14%)
Query: 375 WPKVVDFMQHVPAGSIVLDLGCGNGKNIL--NRTDILQVAG-ERSSGLLEECK------- 424
W K V + G VLDL CG G +++ ++ + G + + G +++C
Sbjct: 141 WIKSVLIQLYAHPGDCVLDLACGKGGDLIKWDKAKVGYYVGVDIAEGSIKDCMTRYNGDT 200
Query: 425 --------GLTARISGADCIRLDLLNTGLKDECADFIICVAVVHH-FSTQARRLHSLQTI 475
AR+ ADC L +D D C +H+ +ST+AR +L +
Sbjct: 201 DQQRRKKFSFPARLICADCYEARLDEHLYEDAPFDICSCQFALHYSWSTEARARQALANV 260
Query: 476 HRLLRTNG 483
LLR G
Sbjct: 261 SALLRPGG 268
>10_08_0028 -
14262607-14262783,14262886-14262932,14263014-14263281,
14263374-14263486,14264362-14264400,14264531-14264591,
14264685-14264834
Length = 284
Score = 33.1 bits (72), Expect = 0.64
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 123 PNPKGLHIIPDFLTEDEEKLFLNTFNIQHVET--TLKNRQVKHYGYEFRYGSNDVDLSCP 180
P P L++ P F+++ E+ L+ +LKNR+++++G V
Sbjct: 28 PIPTLLYV-PGFISDAEQSQLLHHIYQAPAPKWKSLKNRRLQNWG-------GVVHEKGL 79
Query: 181 LQEKIPK-ICKLLWRRLQHYGYDLGVPVQLTVNKYLPGQGIPSHVDKHSPFGETILALSL 239
L + +P + K+ R Q G + +N+Y P QGI H D + F + +SL
Sbjct: 80 LPQALPSWLTKITDRICQWTGLFPSAINHVLINEYHPNQGIMPHQDGPAYF-PVVAIISL 138
Query: 240 GSNVVMDWKHH 250
S VV+D+ H
Sbjct: 139 ASPVVIDFTPH 149
>08_02_0567 + 18769742-18769790,18769928-18771351
Length = 490
Score = 31.5 bits (68), Expect = 2.0
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 356 VHQVYEQIAGHFSTTRHKP-WPKVVDFMQHVPAGS 389
VH ++ + H TT K W V +FMQH+P S
Sbjct: 223 VHSIFGLLVDHAGTTLAKTAWNAVRNFMQHIPTAS 257
>06_01_0275 +
2029542-2029689,2029777-2030295,2030657-2030754,
2031718-2032028,2032560-2032631,2032729-2033398
Length = 605
Score = 30.7 bits (66), Expect = 3.4
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 183 EKIPKICKLLWRRLQ--HYGYDLGVPVQLTVNKYLPGQGIPSHVDKH 227
+ +P + K++ +RL H +P VN Y PG IP H+D H
Sbjct: 271 DPMPSLFKIMIKRLVRWHVLPKTCIPDSCIVNIYDPGDCIPPHIDSH 317
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 30.7 bits (66), Expect = 3.4
Identities = 18/60 (30%), Positives = 25/60 (41%)
Query: 495 TKSSYLSRTRAPLLDRHKLTVVGIHLPVHENRTQFQHKDLLVPWNLRSKAPPLQQPDTTF 554
T+ + R R P + K V L +N QF D+ P R PP ++ TTF
Sbjct: 110 TEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTF 169
>01_05_0705 +
24424457-24424948,24425520-24425624,24426097-24426207,
24426675-24426857,24427066-24427192,24427336-24427397,
24427638-24427724,24428703-24428789,24429210-24429323,
24429507-24429635,24429834-24429896,24430333-24430494,
24430611-24430729,24430786-24431794
Length = 949
Score = 30.3 bits (65), Expect = 4.5
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 18 LNTLKGIVCYEDPRPNVILCNVGQATGFDKQKLLKLLTEYKVNTPLPKFVAEK---GESY 74
L TL+ + P ++C +G A KQ ++ EY + P A + +
Sbjct: 545 LQTLRRCTAVDHTAPT-LMCTLGVANAIFKQCGVEFAAEYVIPLVFPLLTAHQLNVQQFA 603
Query: 75 SYLMFDKAENASLFYEACNGK--AQVDENGTT 104
Y++F K ++ FY K V +NG T
Sbjct: 604 KYILFVKDITSAYFYSKIEEKRGVTVTDNGNT 635
>07_03_0511 -
18911673-18911713,18922395-18923361,18926841-18927659,
18928152-18928757
Length = 810
Score = 29.5 bits (63), Expect = 7.9
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 480 RTNGQALITVWAKDQTKSSYLSRTRAPLLDRHKLTVVGIHLPVHENRTQFQHK 532
R+N + D+TKS+YL R + H+ + H P+ + F+HK
Sbjct: 202 RSNKGYKACTYCMDETKSTYLKHCRKVVYMGHRRFLAANH-PIRKKGKHFEHK 253
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 29.5 bits (63), Expect = 7.9
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 495 TKSSYLSRTRAPLLDRHKLTVVGIHLPVHENRTQFQHKDLLVPWNLRSKAPPLQQPDTTF 554
T+ + R R P + K V L +N QF + ++ P R PP ++ TTF
Sbjct: 110 TEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNSNIKFPLVYRKVRPPTRKLKTTF 169
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.138 0.431
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,871,311
Number of Sequences: 37544
Number of extensions: 793155
Number of successful extensions: 1505
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1493
Number of HSP's gapped (non-prelim): 15
length of query: 594
length of database: 14,793,348
effective HSP length: 86
effective length of query: 508
effective length of database: 11,564,564
effective search space: 5874798512
effective search space used: 5874798512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)
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