GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001061-TA|BGIBMGA001061-PA|IPR005123|2OG-Fe(II)
oxygenase, IPR013216|Methyltransferase type 11
         (594 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37139-6|CAB63431.2|  591|Caenorhabditis elegans Hypothetical pr...   280   2e-75
U21324-14|AAA62568.1|  365|Caenorhabditis elegans Hypothetical p...    97   4e-20
U00050-5|AAM22063.1|  291|Caenorhabditis elegans Hypothetical pr...    52   1e-06
Z73422-1|CAA97764.1|  160|Caenorhabditis elegans Hypothetical pr...    38   0.015
AF067607-8|AAF98614.1|  144|Caenorhabditis elegans Hypothetical ...    31   2.3  
AL031620-3|CAA20928.1|  310|Caenorhabditis elegans Hypothetical ...    30   4.0  
AF036706-12|AAK39280.1|  343|Caenorhabditis elegans Hypothetical...    30   5.3  
AF067609-11|AAC17532.1|  365|Caenorhabditis elegans Hypothetical...    29   9.3  
AC024839-8|AAF60825.1|  383|Caenorhabditis elegans Hypothetical ...    29   9.3  
AC024839-7|AAF60827.1|  383|Caenorhabditis elegans Hypothetical ...    29   9.3  

>Z37139-6|CAB63431.2|  591|Caenorhabditis elegans Hypothetical
           protein C14B1.10 protein.
          Length = 591

 Score =  280 bits (686), Expect = 2e-75
 Identities = 169/499 (33%), Positives = 265/499 (53%), Gaps = 39/499 (7%)

Query: 107 VTFVENVPDTDIICKHPNPKGLHIIPDFLTEDEEKLFLNTFNIQHVETTLKNRQVKHYGY 166
           +++VEN+P+    C+   P  L II ++++ D EK  ++         +LK+R V H+G+
Sbjct: 121 ISYVENLPEATK-CEDFRPANLKIIEEYVSSDLEKELVDLVTNHPSVQSLKHRAVVHFGH 179

Query: 167 EFRYGSNDVDLSCPLQEKIPKICKLLWRRLQHYGYDLGVPVQLTVNKYLPGQGIPSHVDK 226
            F Y +N         + IP +   L  RL    Y    P Q+T N Y  G GIPSH D 
Sbjct: 180 VFDYSTNSAS-EWKEADPIPPVINSLIDRLISDKYITERPDQVTANVYESGHGIPSHYDT 238

Query: 227 HSPFGETILALSLGSNVVMDWKH--HTGKYVPVMVEARSMMIMQDEARYDWQHGIQPRMW 284
           HS F + I+++SL S+VVM++K   ++ +  PV+++ARS+ ++Q E+RY W+HGI  R +
Sbjct: 239 HSAFDDPIVSISLLSDVVMEFKDGANSARIAPVLLKARSLCLIQGESRYRWKHGIVNRKY 298

Query: 285 DPVLDVRLIDNEKVKVITSDTVQREMRISLTFRWTRCGPCKCEYKMLCDSIERNIPETIS 344
           D  +D R          T+  V R+ R+SLT R  R  PC+CE+K  CD   +      S
Sbjct: 299 D--VDPR----------TNRVVPRQTRVSLTLRKIRRKPCECEWKEFCDWDRKGEMSVPS 346

Query: 345 N-DVASNIEDIHVHQVYEQIAGHFSTTRHKPWPKVVDFMQHVPAGSIVLDLGCGNGKNIL 403
           N D+A  +E+ +V  VYE IA HF  TRH  W  V  F+  +P GS++ D+GCGNGK ++
Sbjct: 347 NEDLALKLENSYVSDVYENIASHFDETRHSSWKAVKQFINEIPRGSVMYDVGCGNGKYLI 406

Query: 404 NRTDILQVAGERSSGLLEECKGLTARISGADCIRLDLLNTGLKDECADFIICVAVVHHFS 463
            +  +L++  +   GL +      AR       R D L    + E AD  I +AV+HH +
Sbjct: 407 PKDGLLKIGCDMCMGLCD-----IARKKDCHVARCDALALPFRYESADAAISIAVLHHIA 461

Query: 464 TQARRLHSLQTIHRLLRTNGQALITVWAKDQTKSSYLSR-------TRAPLLDRHKLTVV 516
           T  RR   ++ + R+++   +  +TVW+ DQ++S Y            AP +   + T  
Sbjct: 462 TFERRKRLIEELLRVVKPGSKICVTVWSMDQSQSEYAKMRGNKDDVAAAPAVSSEE-TQT 520

Query: 517 GIHLPVHENRTQFQHKDLLVPWNLRSKAPPLQQPDTTFLRYYHVFDEGELDQLCRDAR-L 575
              L VH+ +  F+ +D+LVPW        + Q   TFLRYYHVF EGE ++L    +  
Sbjct: 521 TNRLKVHDGK-DFEQQDVLVPWT-------IDQKGETFLRYYHVFREGEAEKLIESVQGC 572

Query: 576 AIVRSFYEEGNWCVVCMKV 594
            ++    E+GN+ ++  K+
Sbjct: 573 KLISVEKEQGNYIIIAKKI 591


>U21324-14|AAA62568.1|  365|Caenorhabditis elegans Hypothetical
           protein C35D10.12 protein.
          Length = 365

 Score = 96.7 bits (230), Expect = 4e-20
 Identities = 62/191 (32%), Positives = 94/191 (49%), Gaps = 17/191 (8%)

Query: 348 ASNIEDIHVHQVYEQIAGHFSTTRHKP-----WPKVVDFMQHVPAGSIVLDLGCGNGKNI 402
           + N+E  +VH +Y ++A  +    HKP     WP+V  F+    AGSI+LD+GCG  K  
Sbjct: 5   SENVEQEYVHSIYSRLAT-YQQKEHKPSSPRIWPRVRQFVDQQSAGSIILDVGCGEAKYT 63

Query: 403 LNRTDILQVAGERSSGLLEECKGLTARISGADCIRLDLLNTGLKDECADFIICVAVVHHF 462
             ++ +  +  +  S +L   K         D    D +N  ++D+  D I+ V+V+HH 
Sbjct: 64  SQKSHV--IGFDTCSEVLSSSKK-----DDIDLCLADAINIPIRDDSVDAILNVSVIHHL 116

Query: 463 STQARRLHSLQTIHRLLRTNGQALITVWAKDQTKSSYLSRTRAPLLDRHKLTVVGIHLP- 521
           +T ARR   LQ   R LR  GQ LI  WA +Q    + S+      + H+ T +G  LP 
Sbjct: 117 ATTARRRQVLQECSRCLRIGGQMLIYAWAFEQPNGKFASQDILVPWNMHE-TAIGGRLPK 175

Query: 522 --VHENRTQFQ 530
              H N T+ Q
Sbjct: 176 VKFHLNTTKEQ 186



 Score = 48.8 bits (111), Expect = 1e-05
 Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 551 DTTFLRYYHVFDEGELDQLCRDAR-LAIVRSFYEEGNWCVVCMKV 594
           + TF R+YHVF +GEL  L      L +V + +E GNWCV+  KV
Sbjct: 314 EVTFYRFYHVFKDGELADLVDSVESLKVVSATFEHGNWCVIAEKV 358


>U00050-5|AAM22063.1|  291|Caenorhabditis elegans Hypothetical
           protein F09F7.7a protein.
          Length = 291

 Score = 52.0 bits (119), Expect = 1e-06
 Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 127 GLHIIPDFLTEDEEKLFLNTFNIQHVETTLKNRQVKHYGYEFRYGSNDVDLSCPLQEKIP 186
           GL +I +FL+E EE   LN  +      +   R+ + YG +  +    V     +   +P
Sbjct: 85  GLTLIHNFLSESEESKILNMIDTVEWAQSQSGRRKQDYGPKVNFKHKKVKTDTFVG--MP 142

Query: 187 KICKLLWRRLQHYGYD-LG--VPVQLTVNKY--LPGQGIPSHVDKHSPFGETILALSLGS 241
           +   +L  ++  Y    LG   P ++   +Y  +    I  H D    +G  +++++L +
Sbjct: 143 EYADMLLNKMSEYDVKKLGNYQPFEMCNLEYEEVKKSAIEMHQDDMWIWGNRLISINLIN 202

Query: 242 NVVMDWKHHTGKYVP-VMVEARSMMIMQDEARYDWQHGI 279
             VM   +    ++  V +  RS++ M DE RYDW+HG+
Sbjct: 203 GSVMTLSNDNKSFLCYVHMPHRSLLCMADECRYDWKHGV 241


>Z73422-1|CAA97764.1|  160|Caenorhabditis elegans Hypothetical
           protein B0564.2 protein.
          Length = 160

 Score = 38.3 bits (85), Expect = 0.015
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 9/124 (7%)

Query: 125 PKGLHIIPDFLTEDEEKLFLNTFNI--QHVETTLKNRQVKHYGYEFRYGSNDVDLSCPLQ 182
           P  +  IP+++ E+EE L+ +      Q     L NR++++YG     G        P  
Sbjct: 20  PATMIYIPNWIDEEEENLYKSCIENAPQPKWRVLANRRLQNYG-----GVVGKTALIPTD 74

Query: 183 EKIPKICKLLWRRLQHYGYDLGVPVQLTVNKYLPGQGIPSHVDKHSPFGETILALSLGSN 242
           +  P   K L  ++   G        + VN+Y  GQGI  H D  + F   +  ++LGS+
Sbjct: 75  D-FPVELKYLMTKINDLGIFKNPVNHVLVNEYEAGQGIMPHTDGPA-FHRIVTTVTLGSH 132

Query: 243 VVMD 246
            ++D
Sbjct: 133 CLLD 136


>AF067607-8|AAF98614.1|  144|Caenorhabditis elegans Hypothetical
           protein C18H7.9 protein.
          Length = 144

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 9/42 (21%)

Query: 391 VLDLGCGNGKNILNRTDILQ------VAGERSSGLLEECKGL 426
           VLD+GCGNG   LN T  LQ      V  + S  ++E CK L
Sbjct: 41  VLDIGCGNG---LNSTTFLQWGARKVVGFDNSQEMIENCKNL 79


>AL031620-3|CAA20928.1|  310|Caenorhabditis elegans Hypothetical
           protein C18B12.3 protein.
          Length = 310

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 90  EACNGKAQVDENGTTLYVTFVENVPDTDIICKHPNPKGLHIIPDFLTEDEEKLFLNTFNI 149
           ++C G+ +   N T L  TF+E   D+     +P+ K    + DFL   E+++ +   N 
Sbjct: 175 QSCGGRRRFRTNFTELQSTFLE---DSFKESHYPDHKAKKYMADFLKIPEDRITVWFQNR 231

Query: 150 QHVETTLKNRQVKHYGYE-FRYGSNDVDLSC 179
           +      ++RQ      E F  GSN  D +C
Sbjct: 232 RAKWRRKEHRQRDRTRNESFSGGSNSFDFAC 262


>AF036706-12|AAK39280.1|  343|Caenorhabditis elegans Hypothetical
           protein T07A9.8 protein.
          Length = 343

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 18/142 (12%)

Query: 374 PWPKVVDFMQHVPAGSIVLDLGCGNGKNILNRTDILQVAGERSSGLLEECKGLTARISGA 433
           P  +++ ++Q  P    V DLGCG  K       I +  GE+      +   +  R+   
Sbjct: 183 PLREIIRWLQSKPDQQSVFDLGCGEAK-------IAEAVGEKHKIRSFDLVAVNDRVESC 235

Query: 434 DCIRLDLLNTGLKDECADFII-CVAV----VHHFSTQARRLHSLQTIHRLLRTNGQAL-I 487
           D  +L       +D  AD +I C+++    ++ F  +ARR+  +  I ++     + + I
Sbjct: 236 DMSKLP-----AEDSSADIVIYCLSLMGTNLYDFIREARRVLKIGGILKIAEVTSRFVSI 290

Query: 488 TVWAKDQTKSSYLSRTRAPLLD 509
             + +  TK  +    R  L D
Sbjct: 291 KQFCEAITKMGFEQSHRRELTD 312


>AF067609-11|AAC17532.1|  365|Caenorhabditis elegans Hypothetical
           protein C23H5.1 protein.
          Length = 365

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 372 HKPWPKVVDFMQHVPAGSIVLDLGCGNG 399
           H   P +     H+  G  VLD+GCGNG
Sbjct: 21  HLITPTIKKAFGHILVGKEVLDVGCGNG 48


>AC024839-8|AAF60825.1|  383|Caenorhabditis elegans Hypothetical
           protein Y59E9AR.8 protein.
          Length = 383

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 121 KHPNPKGLHIIPDFLTEDEEKLFLNTFNIQHVETTLKNRQVKHY 164
           ++  P  +H+  D LTEDE K   +    QH + T+K R+   Y
Sbjct: 7   EYDEPFRIHLNLDNLTEDEAKARFSLIYDQHAQ-TMKRRETNDY 49


>AC024839-7|AAF60827.1|  383|Caenorhabditis elegans Hypothetical
           protein Y59E9AR.2 protein.
          Length = 383

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 121 KHPNPKGLHIIPDFLTEDEEKLFLNTFNIQHVETTLKNRQVKHY 164
           ++  P  +H+  D LTEDE K   +    QH + T+K R+   Y
Sbjct: 7   EYDEPFRIHLNLDNLTEDEAKARFSLIYDQHAQ-TMKRRETNDY 49


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.138    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,487,476
Number of Sequences: 27539
Number of extensions: 708722
Number of successful extensions: 1442
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1424
Number of HSP's gapped (non-prelim): 13
length of query: 594
length of database: 12,573,161
effective HSP length: 85
effective length of query: 509
effective length of database: 10,232,346
effective search space: 5208264114
effective search space used: 5208264114
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)