Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001060-TA|BGIBMGA001060-PA|IPR000996|Clathrin light
chain
         (210 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   3.1  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    22   3.1  
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    22   3.1  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    22   4.1  
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    21   7.2  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    21   7.2  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/39 (20%), Positives = 24/39 (61%)

Query: 117 LQIAKKELEDWYKSHEEQISKTKAANRESAKNAERAQAR 155
           L + +++++ W+++   ++ K   A +E  +  ++AQA+
Sbjct: 260 LCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEKQAQAQ 298


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 1   MDDFGDSFVEPEVDPAADFLAREQNQL 27
           +D FG  + E  + P    ++R+QN L
Sbjct: 472 VDQFGAEWAETTIIPKVLAMSRDQNYL 498


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
           protein.
          Length = 96

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/39 (20%), Positives = 24/39 (61%)

Query: 117 LQIAKKELEDWYKSHEEQISKTKAANRESAKNAERAQAR 155
           L + +++++ W+++   ++ K   A +E  +  ++AQA+
Sbjct: 42  LCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEKQAQAQ 80


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol
          oxidase subunit 2 protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 60 SAFDA-NGLLDDA--PLGSTPTTVFKQEREEPEKIK 92
          + FD  N  L+D   PLG + +  FKQ+ EE   +K
Sbjct: 26 TVFDIPNDYLNDKYKPLGVSLSNRFKQDAEETVPVK 61


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 125 EDWYKSHEEQISKTKAANRESAKNAERAQ---ARGSESSVE 162
           +D+ K H+  IS    A R      ERA+   +  +++S+E
Sbjct: 71  QDFKKKHKADISGNPRALRRLRTQCERAKRTLSSATQASIE 111


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 125 EDWYKSHEEQISKTKAANRESAKNAERAQ---ARGSESSVE 162
           +D+ K H+  IS    A R      ERA+   +  +++S+E
Sbjct: 71  QDFKKKHKADISGNPRALRRLRTQCERAKRTLSSATQASIE 111


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.309    0.127    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,305
Number of Sequences: 317
Number of extensions: 1576
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 210
length of database: 114,650
effective HSP length: 54
effective length of query: 156
effective length of database: 97,532
effective search space: 15214992
effective search space used: 15214992
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.3 bits)
S2: 41 (20.6 bits)