Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001060-TA|BGIBMGA001060-PA|IPR000996|Clathrin light
chain
         (210 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.40 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.40 
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   3.7  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 16  AADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFV 54
           A+D   R+   + GLE+E E +      S +  GFDD++
Sbjct: 229 ASDGWGRQIKLVEGLEEEAEGAITVELQSENIPGFDDYM 267


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 16  AADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFV 54
           A+D   R+   + GLE+E E +      S +  GFDD++
Sbjct: 319 ASDGWGRQIKLVEGLEEEAEGAITVELQSENIPGFDDYM 357


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 68  LDDAPLGSTPTTVFKQEREEPEKIKIW 94
           L++   G T   VF+Q +    KI  W
Sbjct: 130 LEEREAGKTDEVVFRQTKAIANKINSW 156


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.127    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,244
Number of Sequences: 429
Number of extensions: 1826
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 210
length of database: 140,377
effective HSP length: 55
effective length of query: 155
effective length of database: 116,782
effective search space: 18101210
effective search space used: 18101210
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 42 (21.0 bits)