Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001060-TA|BGIBMGA001060-PA|IPR000996|Clathrin light
chain
(210 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe... 51 1e-07
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 29 0.66
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 28 1.2
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 27 1.5
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma... 27 2.0
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 27 2.0
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 2.7
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 27 2.7
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 2.7
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 27 2.7
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 26 3.5
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 26 4.7
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 4.7
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 25 6.2
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 6.2
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 25 6.2
SPBC685.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.2
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 25 8.2
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 25 8.2
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom... 25 8.2
>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 50.8 bits (116), Expect = 1e-07
Identities = 50/216 (23%), Positives = 88/216 (40%), Gaps = 19/216 (8%)
Query: 1 MDDFGDSFVEPEVDPA---ADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDD----F 53
++DF D V VD + DFL RE+ L + ET A+ N + F
Sbjct: 7 LEDFDDGLVTAPVDDSKNNTDFLEREKLALGEDAGQFETPEDKDALLNFENDSEAEQTRF 66
Query: 54 VE--VPSASAFDANGLLD--DAP-LGSTPTTVFKQEREEPEKIKIWREEQXXXXXXXXXX 108
+ P + A+G AP +G + E +PE ++ W+E+Q
Sbjct: 67 EQNFPPIDAEMQASGTFSAPKAPYMGQAEVHPPEDESGDPEPVRKWKEDQMKRIQERDES 126
Query: 109 XXXXXXXMLQIAKKELEDWYKSHEEQISKTKAANRESAKNAERAQARGSESSVEEGNEWA 168
++ A+K ++D+Y++ ++ K A +R K E+ +ES W
Sbjct: 127 SKKLRESNIEKARKAIDDFYENFNDKRDKVIAKSR---KEQEKL-LEENESKSTGTTSWE 182
Query: 169 RVSELCDFGPR---RGRDVARLRSIVLQLKQAGSRP 201
R+ +L D + GR R R +++ L + + P
Sbjct: 183 RILKLIDLSDKPEAHGRSTERFRELLISLAKDSNAP 218
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 28.7 bits (61), Expect = 0.66
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 120 AKKELEDWYKSHEEQISKTKAANRESAKNAERAQARGSESSVEEGNEWAR 169
AK+E E+ K E+ +K +A + + E+A+ E++ E E A+
Sbjct: 561 AKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAK 610
Score = 28.7 bits (61), Expect = 0.66
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 82 KQEREEPEKIKIWREEQXXXXXXXXXXXXXXXXXMLQI---AKKELEDWYKSHEEQISKT 138
K +RE EK K EE + AK+E E+ K E+ +K
Sbjct: 584 KAKREAEEKAKREAEENAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKR 643
Query: 139 KAANRESAKNAERAQARGSESSVEEGNEWAR 169
+A + + E+A+ E++ E E A+
Sbjct: 644 EAEEKAKREAEEKAKREAEENAKREAEEKAK 674
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 120 AKKELEDWYKSHEEQISKTKAANRESAKNAERAQARGSESSVEEGNEWAR 169
AK+E E+ K E+ +K +A + E+A+ E + E E A+
Sbjct: 577 AKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEEKAKREAEEKAK 626
Score = 26.6 bits (56), Expect = 2.7
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 82 KQEREEPEKIKIWREEQXXXXXXXXXXXXXXXXXMLQIAKKELEDWYKSHEEQISKTKAA 141
K +RE EK K EE+ + AK+E E+ K E+ +K +A
Sbjct: 608 KAKREAEEKAKREAEEKAKREAEEKAKREAE-----EKAKREAEEKAKREAEEKAKREAE 662
Query: 142 NRESAKNAERAQARGSESSVEEGNE 166
+ E+A+ E++ E E
Sbjct: 663 ENAKREAEEKAKREAEENAKREAEE 687
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 13 VDPAADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDA 71
V+ D + E+N + E+ETS PP A+S ST ++ + S++ + L D A
Sbjct: 454 VEVHTDANSPEENNTPVTKKEVETSKPP-AVSGSTPPVNEAAVIESSNTLEKEPLSDVA 511
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 27.5 bits (58), Expect = 1.5
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 130 SHEEQISKTKAANRESAKNAERAQARGSESSVEEGNEWARVSELCDFGPR-----RGRDV 184
S + Q ++++A +R +++ RA + S + ++ W R + FG R +
Sbjct: 138 SQKNQEARSRANSRVNSRANSRANSSVSLAGMDGSPNWKRKMKSAVFGSRVKLNDEEAQL 197
Query: 185 ARLRSIVLQLKQAGSRP 201
R +S V +QA SRP
Sbjct: 198 PRNKSSVSIAEQAASRP 214
>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 27.1 bits (57), Expect = 2.0
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 150 ERAQARGSESSVEEGNEWARVSELCDFGPRRGRDVARLRSIVLQLKQA 197
ER+ E+S+EE N R+ L DFGP ++ I+ QL+ A
Sbjct: 7 ERSTQYVREASLEEQN---RIMPLIDFGPYVNQEPGAHERIIQQLRAA 51
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 27.1 bits (57), Expect = 2.0
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 77 PTTVFKQEREEPEKIKIWREEQXXXXXXXXXXXXXXXXXMLQIAKKELEDWYKSHEEQIS 136
P +F Q P +KIWR+ ML +K L+ + ++Q++
Sbjct: 356 PKQLFDQIPNLPPNVKIWRDVLELGQSQRLPPEQLKLIGMLY--RKHLQIILQHRQQQLN 413
Query: 137 KTKAANRESAKNAERAQARGSESSVEEGNEWA 168
K + A R +++NA G+ GN A
Sbjct: 414 KIQNA-RMNSQNAPNTNKLGNPQPDNTGNPQA 444
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 30 LEDELETSAPPPAISTSTNGFDDFVEVPSASAFD 63
L+D PP ++ N D+ +P+ S+FD
Sbjct: 2417 LKDAANYGLPPITMNVKVNDTGDYSNIPTVSSFD 2450
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 36 TSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTP 77
TS P A S S+N + VE S F+ LD++ L P
Sbjct: 587 TSFDPKASSKSSNSLKESVEALSEIPFEDAPALDESDLSGDP 628
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 121 KKELEDWYKSHEEQISKTKAANRESAKNAERAQARGSESSVEEGNE 166
KKE E S++++++ ES ++ +++ SESS E E
Sbjct: 79 KKEESSSESESESSSSESESSSSESESSSSESESSSSESSSSESEE 124
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 35 ETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTTVFKQ 83
E P S + GF+D+V P++ + ++ L S+P+T + Q
Sbjct: 348 EAGGSPSKSSPTRPGFNDYVNRPTSVMPSLSNMIVSPDLDSSPSTDWNQ 396
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 26.2 bits (55), Expect = 3.5
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 36 TSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTT 79
+S PP++ S N P+ S +D NGL P+GS T
Sbjct: 187 SSGKPPSLHLSGNRRLSMGS-PTKSIYDQNGLTTPRPIGSDDLT 229
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 121 KKELEDWYKSHEEQISKTKAANRESAKNAE---RAQARG 156
KK++ DWY +E+I++ NRE+ ++ + RA+ G
Sbjct: 682 KKDV-DWYTEEKEKIARQLVINREAFEDMDPESRAEIEG 719
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.8 bits (54), Expect = 4.7
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 123 ELEDWYKSHEEQIS-KTKAANRESAKNAERAQARGSESSVEEGNEWARVSELCDFGPRR- 180
+L +W +S K K + + E + S+ + N L D R
Sbjct: 944 QLNEWNSELRIDVSTKFKCIKEKKSNIGEEVRIIASKIESTDDNLRKLQERLADLRTRER 1003
Query: 181 -GRDVARLRSIVLQLKQAGSRPNY 203
D RLR+++ QL++A ++ NY
Sbjct: 1004 NASDNLRLRALMRQLEEAVTQKNY 1027
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.4 bits (53), Expect = 6.2
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 21 AREQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTTV 80
+R Q L+G D+ + ++ P G + +EV S FD + + + TT+
Sbjct: 418 SRYQKLLSGDADDFQANSNPFEDDDKLEGANGEMEVTFTSGFDVDNNANSSE--KDETTI 475
Query: 81 FKQEREEPEK 90
K +R+ E+
Sbjct: 476 EKYKRKAAER 485
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 41 PAISTSTNGFDDFVEVPSASA 61
P I +ST +DFVEVP SA
Sbjct: 203 PQIFSSTLYINDFVEVPGTSA 223
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 25.4 bits (53), Expect = 6.2
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 138 TKAAN-RESAKNAERAQARGSESSVEEGNEWARVSELCDFGPRRGRDVARLRSIVLQL 194
TK +N R +AK E QA V+E +W D GP + + +VL L
Sbjct: 20 TKGSNTRLAAKQRETLQAYDYLCRVDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLAL 77
>SPBC685.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 97
Score = 25.4 bits (53), Expect = 6.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 116 MLQIAKKELEDWYKSHEEQISKTKAANRESAKNAERAQARGSES-SVEEGNEWARVSE 172
+L+I E DW + +SKT N N E A A G E VE+ ++ +SE
Sbjct: 41 ILRIGSFEQNDWVAMENDALSKTIITN-----NTEYAFAEGEEPLLVEKPKDYDDMSE 93
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 8.2
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 25 NQLAGLEDELETS--APPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPT 78
N++ ++D L T P + G + ++PSAS + + L +P G PT
Sbjct: 375 NRIGSVDDLLNTRQFTSSPIGGSMPKGPNSIYKIPSASMVNLSSPLVTSPSGLNPT 430
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 120 AKKELEDWYKSHEEQISKTKAANRESAKNAERAQARGSESSV 161
A+ +LE+ ++ +Q +K+ + +K + +R S SSV
Sbjct: 83 ARLDLENMFEESSKQSPPSKSPTKNPSKKSSNNSSRRSSSSV 124
>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 25.0 bits (52), Expect = 8.2
Identities = 12/59 (20%), Positives = 26/59 (44%)
Query: 116 MLQIAKKELEDWYKSHEEQISKTKAANRESAKNAERAQARGSESSVEEGNEWARVSELC 174
ML+ A+ +LED+ + + + + + +K A + SE ++ N + C
Sbjct: 185 MLEDARSDLEDYKEGDDSNWDDFGSESEDDSKEAHSEEVFRSEEQIQLANSLLQKLNAC 243
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.309 0.127 0.358
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 898,701
Number of Sequences: 5004
Number of extensions: 33662
Number of successful extensions: 124
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 28
length of query: 210
length of database: 2,362,478
effective HSP length: 70
effective length of query: 140
effective length of database: 2,012,198
effective search space: 281707720
effective search space used: 281707720
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 52 (25.0 bits)
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