Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001060-TA|BGIBMGA001060-PA|IPR000996|Clathrin light
chain
(210 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171... 37 0.014
05_06_0075 - 25379820-25380776,25380851-25381179,25381255-25381453 32 0.39
07_03_0951 - 22836167-22836358,22836455-22837213 31 0.52
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 31 0.68
04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036 31 0.68
07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012... 30 1.2
11_06_0506 - 24380469-24380632,24381737-24383893,24384488-243845... 30 1.6
07_03_1791 - 29552218-29552427,29552858-29553358,29560369-295604... 29 2.1
03_06_0371 + 33435936-33436472,33436554-33436741,33437146-334372... 29 2.8
04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789 28 6.4
02_05_0098 - 25807993-25808193,25808629-25808710,25808891-258089... 28 6.4
01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592 28 6.4
12_01_0978 + 9908001-9908175,9908538-9908619,9910793-9910904,991... 27 8.4
08_02_1331 + 26195949-26196132,26196606-26196710,26197270-261981... 27 8.4
02_05_1247 + 35233756-35233785,35234902-35236107 27 8.4
01_06_0836 - 32321431-32321556,32321656-32321872,32321975-323235... 27 8.4
>01_06_1249 -
35714645-35716003,35716700-35716761,35717007-35717181,
35717276-35717301,35717917-35717983,35719803-35719945,
35720337-35720349
Length = 614
Score = 36.7 bits (81), Expect = 0.014
Identities = 26/118 (22%), Positives = 50/118 (42%)
Query: 70 DAPLGSTPTTVFKQEREEPEKIKIWREEQXXXXXXXXXXXXXXXXXMLQIAKKELEDWYK 129
+ P G P + ER + +W Q L+ +L+D K
Sbjct: 126 EEPQGGAPHDDERGERGKCSMWTLWTHSQLVVVGWLLKRRPPTKLSELESQLSQLQDELK 185
Query: 130 SHEEQISKTKAANRESAKNAERAQARGSESSVEEGNEWARVSELCDFGPRRGRDVARL 187
+EQ+ T+ + R + + AE A+A+ + +S + + A+++EL R ++ RL
Sbjct: 186 KAKEQLLSTEHSKRRALQEAEDARAQAAAASAQVRDSEAQLAELSSAEESRLLELRRL 243
>05_06_0075 - 25379820-25380776,25380851-25381179,25381255-25381453
Length = 494
Score = 31.9 bits (69), Expect = 0.39
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 143 RESAKNAERAQA-RGSESSVEEGNEWARVSELCDFGPRRGR-----DVARLRSIVLQLKQ 196
++ A + E+A+ RG E+ +EWA + D GP D A + KQ
Sbjct: 192 KKGADDGEQAEVVRGGGGGGEDIDEWAEACAVFDLGPETAEGSDNADAAAAEGDMRSAKQ 251
Query: 197 AGSRP 201
AG RP
Sbjct: 252 AGKRP 256
>07_03_0951 - 22836167-22836358,22836455-22837213
Length = 316
Score = 31.5 bits (68), Expect = 0.52
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 127 WYKSHEEQISKTKA-----ANRESAKNAERAQARGSESSVEEGNEWARVSELCDFGPRRG 181
W K +E ++ + +A A E AK +A+ + + + + G + ARV EL +F G
Sbjct: 248 WLKKYERKLEEKRAKAMEKAQNEVAKARRKAEEKRASAEAKRGTKVARVLELANFMRAVG 307
Query: 182 R 182
R
Sbjct: 308 R 308
>06_03_0478 - 21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 31.1 bits (67), Expect = 0.68
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 86 EEPEKIKIWREEQXXXXXXXXXXXXXXXXXMLQIAKKEL---EDWYKSHEEQISKTKAAN 142
E+PE+++++ +++ + AK+E+ ED K+ EE+ S+ A
Sbjct: 1211 EDPEEVELYEDDEEMDEAAAEELVEQNEDNLNDKAKQEVTTEEDGNKNTEERESENNANM 1270
Query: 143 RESAKNAERAQARGSESSVEEGNEWARVSELCDFGPRRGRDVARLRS 189
E A + E Q+ +S+ EG + VSE D G++V RS
Sbjct: 1271 LEKAASGEDKQSVVEKSASVEGKQ--SVSEKGD--KAVGKEVKTTRS 1313
>04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036
Length = 762
Score = 31.1 bits (67), Expect = 0.68
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 129 KSHEEQISKTKAANRESAKNAERAQARGSESSVEEGNEWARVSELCDFGPRRGRDVARLR 188
K E +++KAA +A+ + A+A + +S+E+ ++L ++ D+A LR
Sbjct: 150 KLQEALAAQSKAAEESAAEQSGDAEAEQASASMEDELR----TKLASMQSQQEADMAALR 205
Query: 189 SIVLQLKQA 197
S V QL+QA
Sbjct: 206 STVEQLEQA 214
>07_03_1762 -
29299328-29299437,29299782-29299871,29300487-29301291,
29301956-29303278
Length = 775
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 2 DDFGDSFVEPEVDPAADFLAREQNQLAGLEDE---LETSAPPP 41
++ GD EPE + ADF+ E+ + LEDE E AP P
Sbjct: 56 EEGGDDEAEPEDESDADFVGDEEEEEEDLEDEDDLEEVKAPRP 98
>11_06_0506 - 24380469-24380632,24381737-24383893,24384488-24384541,
24384543-24384597,24384914-24384916,24385192-24385231,
24385576-24385632,24388124-24388412,24389764-24389771,
24390633-24390688,24391207-24391488,24391651-24391811,
24391887-24392121,24392860-24392943,24393022-24393117,
24393333-24394055,24396523-24396987
Length = 1642
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 127 WYKSHEEQISKTKAANRESAKNAERAQARGSESSVEEG 164
WYK E++ ++ + + +A+ + A GS S+ EEG
Sbjct: 1353 WYKDQEKKQAEATSGSGSAAEEEQAAATGGSGSAAEEG 1390
>07_03_1791 -
29552218-29552427,29552858-29553358,29560369-29560449,
29563783-29564015,29564976-29565042
Length = 363
Score = 29.5 bits (63), Expect = 2.1
Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 6/132 (4%)
Query: 55 EVPSASAFDANGLLDDAPLGSTPTTVFKQEREEPEKIKIWREEQXXXXXXXXXXXXXXXX 114
E +A A + L ++A TT+ + ++W E+
Sbjct: 171 ERTAAEAEASLRLCEEAAAERDRTTLAVKASAARRAKELWLREEACRERDAALAECKAEV 230
Query: 115 XMLQIAKKELEDWYKSHEEQISKTKAANRESAKNAERAQARGSESSVEEGNEWARVSELC 174
++A ++L + HEE ++ +A + ESA+ AE A S +E AR +L
Sbjct: 231 NRREVASRQLGEQLAKHEEAVAGREARHLESAR-AECAAMAARASELE-----AREKDLA 284
Query: 175 DFGPRRGRDVAR 186
G G ++AR
Sbjct: 285 VGGQPGGAELAR 296
>03_06_0371 +
33435936-33436472,33436554-33436741,33437146-33437245,
33437360-33437545,33438977-33439186,33439772-33439959,
33440083-33440341
Length = 555
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 141 ANRESAKNAERAQARGSESSVEEGNEWARVSELCDFGPRR--GRDVARLRSI 190
A E + A A G E E ++W V+ +CD PR+ G+ V LR +
Sbjct: 65 ARAEEEEEAAPAVGGGEEGRFEWLDQWYPVAPVCDLDPRKPHGKMVMGLRVV 116
>04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789
Length = 877
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 128 YKSHEEQISKTKAANRESAKNAERAQARGSESSVEEGNEWARVSELCD 175
++ +E+ + +A + A ERA A G E+S N R S CD
Sbjct: 357 FEDEDEEEGEEEAGDAGEAARGERAVADGYENSPMSTNSRKRGSSSCD 404
>02_05_0098 -
25807993-25808193,25808629-25808710,25808891-25808978,
25809062-25809133,25809388-25809556
Length = 203
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 82 KQEREEPEK-IKIWREEQXXXXXXXXXXXXXXXXXMLQIAKKELEDWYKSHEEQISKTKA 140
K E ++ E IK W E + K ++ K EE++ + KA
Sbjct: 86 KVETDKRESLIKAWEENEKAKAENRASKKLLDIISWENTKKAVIKTQLKKKEEELERKKA 145
Query: 141 ANRESAKNAE 150
E AKN E
Sbjct: 146 EYAEKAKNKE 155
>01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592
Length = 853
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/60 (26%), Positives = 22/60 (36%)
Query: 129 KSHEEQISKTKAANRESAKNAERAQARGSESSVEEGNEWARVSELCDFGPRRGRDVARLR 188
+ H +++ A RE RA RG + E G R E + ARLR
Sbjct: 187 RKHRAALAELATARRELEAELARAARRGDAAEAELGEALERRDEAASTAAELSAECARLR 246
>12_01_0978 +
9908001-9908175,9908538-9908619,9910793-9910904,
9911965-9913737
Length = 713
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 86 EEPEKIKIWREEQXXXXXXXXXXXXXXXXXMLQIAKKELEDWYKSHEEQISKTKAANRES 145
EE EK+ + L+ A+KE+ED + EE + + + A E+
Sbjct: 560 EESEKLSEMKVAAAMAQVEAVRASENEAIKKLEAARKEMEDMELATEEALKRAEMA--EA 617
Query: 146 AKNAERAQAR 155
AK A + R
Sbjct: 618 AKRAVEGELR 627
>08_02_1331 +
26195949-26196132,26196606-26196710,26197270-26198127,
26198669-26199458,26200240-26200329,26200636-26200712,
26200797-26201383
Length = 896
Score = 27.5 bits (58), Expect = 8.4
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 6 DSFVEPEVDPAAD-FLA--REQNQLA-GLEDELETSAPPPAISTSTNGFDDFVEV 56
DS + PE DPA+ F++ RE+N LA G +DE SA P +ST V+V
Sbjct: 435 DSLI-PE-DPASQSFVSPLREENALASGSDDEKNDSAVQPEVSTEAKRTTSSVKV 487
>02_05_1247 + 35233756-35233785,35234902-35236107
Length = 411
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 6 DSFVEPEVDPAADFLAREQNQLAGLEDELETSAPPPAI-STSTN 48
D FV PEV E+ + E T+A PA+ +TSTN
Sbjct: 288 DQFVRPEVVVIQVITGAEEEGAQAPQQEANTAASDPAVDATSTN 331
>01_06_0836 -
32321431-32321556,32321656-32321872,32321975-32323590,
32323670-32323753,32323834-32324104,32324294-32324547,
32324709-32324918,32325839-32326024
Length = 987
Score = 27.5 bits (58), Expect = 8.4
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 82 KQEREEPEKIK--IWREEQXXXXXXXXXXXXXXXXXMLQIAKKELEDWYKSHEEQISKTK 139
++EREE ++IK + +E+ + Q + EL +E+I +
Sbjct: 439 QKEREEIQRIKSDLEKEKAFFEEEKREAIQAQQDLAITQADRDELLTLQMKLKEEIDSLR 498
Query: 140 AANRESAKNAERAQARGSESSVE 162
A RE +A+R QA +E
Sbjct: 499 AQKRELMADADRLQAEKERFEIE 521
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.309 0.127 0.358
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,940,143
Number of Sequences: 37544
Number of extensions: 229785
Number of successful extensions: 684
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 677
Number of HSP's gapped (non-prelim): 17
length of query: 210
length of database: 14,793,348
effective HSP length: 79
effective length of query: 131
effective length of database: 11,827,372
effective search space: 1549385732
effective search space used: 1549385732
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 58 (27.5 bits)
- SilkBase 1999-2023 -