GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001060-TA|BGIBMGA001060-PA|IPR000996|Clathrin light
chain
         (210 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ974170-1|ABJ52810.1|  511|Anopheles gambiae serpin 12 protein.       29   0.10 
AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein p...    24   3.9  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   5.1  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   6.7  

>DQ974170-1|ABJ52810.1|  511|Anopheles gambiae serpin 12 protein.
          Length = 511

 Score = 29.1 bits (62), Expect = 0.10
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 54  VEVPSASAFDANGLLDDAPLGSTPTTVFKQEREEPEKIKI 93
           +E  +  A DA+  LDDA +  TP ++ + + E+PEK+ +
Sbjct: 191 MEAMNEVAADAD--LDDAKMKKTPDSIDRVDHEQPEKMSL 228


>AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein
           protein.
          Length = 455

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 18  DFLAREQNQLAGLEDELETSAPPPAIS 44
           D LA EQ   A L++EL+ +A   A+S
Sbjct: 314 DPLAEEQELKAALKEELQVNAGVTAVS 340


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1248

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 133  EQISKTKAANRESAKNAERAQARGSESSVEEGNEWARVSELCD-FGPRRGRDVARLRSIV 191
            EQ+    AA R +A+N  +A+AR ++   E+  +   VS     +GP     +A + + V
Sbjct: 1040 EQMQDDPAAARRAARN-RQARARRAQERAEQLGDVELVSAFRQLYGPAASDAIASIPAAV 1098


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 123 ELEDWYKSHEEQISKTKAANRESAKNAERAQARGSESSVEEGNEWARVSELC 174
           E  DW   H +  +      R S+  A   Q+ G+ +S+  GN    +++ C
Sbjct: 740 EPPDWELKHADCFNHCLEVYRPSSGGAVALQSNGTCASLWLGNAIQTLNKYC 791


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.309    0.127    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,758
Number of Sequences: 2123
Number of extensions: 6919
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 4
length of query: 210
length of database: 516,269
effective HSP length: 61
effective length of query: 149
effective length of database: 386,766
effective search space: 57628134
effective search space used: 57628134
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 46 (22.6 bits)