Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001060-TA|BGIBMGA001060-PA|IPR000996|Clathrin light
chain
(210 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g22790.1 68416.m02873 kinase interacting family protein simil... 33 0.14
At5g58580.1 68418.m07341 zinc finger (C3HC4-type RING finger) fa... 32 0.25
At2g40060.1 68415.m04922 expressed protein 32 0.33
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 31 0.57
At1g13220.1 68414.m01533 nuclear matrix constituent protein-rela... 31 0.57
At3g57540.1 68416.m06407 remorin family protein contains Pfam do... 30 1.00
At3g09070.1 68416.m01066 glycine-rich protein similar to hypothe... 30 1.00
At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam PF05... 30 1.00
At3g56760.1 68416.m06313 calcium-dependent protein kinase, putat... 30 1.3
At5g45000.1 68418.m05518 Toll-Interleukin-Resistance (TIR) domai... 29 1.7
At4g08113.1 68417.m01331 myosin heavy chain-related similar to M... 29 1.7
At4g00270.1 68417.m00034 DNA-binding storekeeper protein-related... 29 1.7
At5g46070.1 68418.m05665 guanylate-binding family protein contai... 29 2.3
At4g33650.1 68417.m04780 dynamin-like protein 2a (ADL2a) identic... 29 3.1
At3g12020.1 68416.m01490 kinesin motor protein-related similar t... 29 3.1
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 28 4.0
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 28 5.3
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 28 5.3
At5g16500.1 68418.m01928 protein kinase family protein contains ... 27 7.0
At3g55060.1 68416.m06115 expressed protein contains weak similar... 27 7.0
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 27 7.0
At2g14010.1 68415.m01557 hypothetical protein and genefinder 27 7.0
At3g29575.1 68416.m03714 expressed protein 27 9.3
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 27 9.3
>At3g22790.1 68416.m02873 kinase interacting family protein similar to
kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1694
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 132 EEQISKTKAANRESAKNAERAQARGSESSVEEGNEWARVSELCDFGPRRGRDVARLRSI 190
EE + T AN E + E + ES +GN R SELCD R+ ++ L ++
Sbjct: 1173 EEMLKATHNANAELCEAVEELRKDCKESRKLKGNLEKRNSELCDLAGRQDEEIKILSNL 1231
>At5g58580.1 68418.m07341 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 308
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 44 STSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTTVFKQEREEPEK 90
S GFDD V P+A+A + LD + + S P V+++ EE ++
Sbjct: 88 SLPLGGFDDGVSSPAATATRDDKGLDSSVISSIPLFVYEENEEEEDE 134
>At2g40060.1 68415.m04922 expressed protein
Length = 258
Score = 31.9 bits (69), Expect = 0.33
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Query: 62 FDANGLLDDAPLGSTPTTVFKQEREEPEKIKIWREEQXXXXXXXXXXXXXXXXXMLQIAK 121
F +NG D P+ P+ + E +E ++ WR + +++ A
Sbjct: 66 FGSNGD-HDGPILPPPS---EMESDEGFALREWRRQNAIQLEEKEKREKELLKQIIEEAD 121
Query: 122 KELEDWYKSHEEQISKTKAANRESAK-NAERAQARGSESSVEEGNEWARVSEL 173
+ E+++K E KAANRE K E + +ESS N W ++EL
Sbjct: 122 QYKEEFHKKIEVTCENNKAANREKEKLYLENQEKFYAESS---KNYWKAIAEL 171
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 31.1 bits (67), Expect = 0.57
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 117 LQIAKKELEDWYKSHEEQISKTKAANRESAKNAERAQARGSESSVEEGNEWARVSELCDF 176
L++ +KELE+W + + +SK+K + K E + E+ + A+ +EL F
Sbjct: 300 LKLKEKELEEWNRKVDLSMSKSKETEEDITKRLEELTTKEKEAHTLQITLLAKENELRAF 359
>At1g13220.1 68414.m01533 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 391
Score = 31.1 bits (67), Expect = 0.57
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 117 LQIAKKELEDWYKSHEEQISKTKAANRESAKNAERAQARGSESSVEEGNEWARVSELCDF 176
L++ +KELE+W + + +SK+K + K E + E+ + A+ +EL F
Sbjct: 313 LKLKEKELEEWNRKVDLSMSKSKETEEDITKRLEELTTKEKEAHTLQITLLAKENELRAF 372
>At3g57540.1 68416.m06407 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 296
Score = 30.3 bits (65), Expect = 1.00
Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 6/117 (5%)
Query: 76 TPTTVFKQEREEPE-KIKIWREEQXXXXXXXXXXXXXXXXXMLQIAKKELEDWYKSHEEQ 134
T +V + +REE E KI W+ + L W K E +
Sbjct: 173 TTASVQRVKREEVEAKITAWQTAKVAKINNRFKRQDAVINGWLNEQVHRANSWMKKIERK 232
Query: 135 ISKTKAANRESAKN----AER-AQARGSESSVEEGNEWARVSELCDFGPRRGRDVAR 186
+ +A E +N A+R A+ R + + + G E ARV E+ + GR A+
Sbjct: 233 LEDRRAKAMEKTQNKVAKAQRKAEERRATAEGKRGTEVARVLEVANLMRAVGRPPAK 289
>At3g09070.1 68416.m01066 glycine-rich protein similar to
hypothetical protein GB:AAD32765 [Arabidopsis thaliana]
Length = 685
Score = 30.3 bits (65), Expect = 1.00
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 28 AGLEDELETSAPPPAISTSTNGFDDFVEVPSAS 60
A ++ +E APPP + TNG D V +P S
Sbjct: 413 ADMQFPVEEPAPPPPVVNQTNGVSDPVIIPGGS 445
>At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam
PF05794: T-complex protein 11
Length = 1131
Score = 30.3 bits (65), Expect = 1.00
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 25 NQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTTV 80
NQLA S+P ++S+S++ D + V ++ + + L DD P S P+ V
Sbjct: 588 NQLAHFFSPSPASSPVQSVSSSSSRSKDSIGVEGSNRVNRSLLKDDTPPSSGPSRV 643
>At3g56760.1 68416.m06313 calcium-dependent protein kinase,
putative / CDPK, putative similar to
calcium/calmodulin-dependent protein kinase CaMK3
[Nicotiana tabacum] gi|16904226|gb|AAL30820
Length = 577
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/70 (21%), Positives = 32/70 (45%)
Query: 23 EQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTTVFK 82
+Q++ + +E+E + + ++GF + P S F + + + + STP +FK
Sbjct: 11 QQSKNLPISNEIEETPKNSSQKAKSSGFPFYSPSPLPSLFKTSPAVSSSSVSSTPLRIFK 70
Query: 83 QEREEPEKIK 92
+ P K
Sbjct: 71 RPFPPPSPAK 80
>At5g45000.1 68418.m05518 Toll-Interleukin-Resistance (TIR)
domain-containing protein domain signature TIR exists,
suggestive of a disease resistance protein.
Length = 371
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 51 DDFVEVPSASAFDANGLLD-DAPLGSTPTTVFKQEREEPEKIKIWRE 96
D+ V +P DA + P G + + R EPE+IK W+E
Sbjct: 98 DELVVIPIFYRLDATNCKRLEGPFGDNFRNLERDYRSEPERIKKWKE 144
>At4g08113.1 68417.m01331 myosin heavy chain-related similar to
Myosin heavy chain, skeletal muscle, extraocular
(MyHC-eo) (SP:Q9UKX3) {Homo sapiens}
Length = 764
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 10 EPEVDPAADFLAREQNQLAGLEDELETSAPPPAISTS 46
+PEV+PAA+ + +Q + E+ +E +A P + S
Sbjct: 383 QPEVNPAAELVVSDQRVASPREERMEPAAATPEAAAS 419
>At4g00270.1 68417.m00034 DNA-binding storekeeper protein-related
contains similarity to storekeeper protein [Solanum
tuberosum] gi|14268476|emb|CAC39398; contains PF04504:
Protein of unknown function, DUF573
Length = 302
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 125 EDWYKSHEEQISKTKAANRE-SAKNAERAQARGSESSVEEGNE 166
E+ K HEE+++ T+ N +AK E + G E E+ ++
Sbjct: 186 EEMLKEHEEEVANTELLNENGAAKTTENGTSSGKERHDEDNDD 228
>At5g46070.1 68418.m05665 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 1060
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 121 KKELEDWYKSHEEQISKTKAANRESAKNAE--RAQARGSESSVEEGNEWAR 169
K+E+++W +++++ + K KA + + E R ++ SE+ V E A+
Sbjct: 568 KEEIKEWIRNYDQIVLKQKAVQEQLSSEMEVLRTRSTTSEARVAAAREQAK 618
>At4g33650.1 68417.m04780 dynamin-like protein 2a (ADL2a) identical
to dynamin like protein 2a (ADL2a) [Arabidopsis
thaliana] GI:19032337; supported by cDNA gi:19032336
Length = 808
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 156 GSESSVEEGNEWARVSELCDFGPRRGRDVARLRSIVLQLKQAGSRPN 202
GS+SS + A V DF PR G D+ R +VLQL Q SR N
Sbjct: 66 GSQSSGKSSVLEALVGR--DFLPR-GNDICTRRPLVLQLLQTKSRAN 109
>At3g12020.1 68416.m01490 kinesin motor protein-related similar to
putative kinesin heavy chain GB:AAD23684 GI:4567271 from
[Arabidopsis thaliana]
Length = 1030
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/81 (24%), Positives = 38/81 (46%)
Query: 122 KELEDWYKSHEEQISKTKAANRESAKNAERAQARGSESSVEEGNEWARVSELCDFGPRRG 181
KEL+ K E + + NR+ A+ + A+ S ++VE V++L + R
Sbjct: 844 KELKQDAKELSESKEQLELRNRKLAEESSYAKGLASAAAVELKALSEEVAKLMNQNERLA 903
Query: 182 RDVARLRSIVLQLKQAGSRPN 202
++A +S + Q + G+ N
Sbjct: 904 AELATQKSPIAQRNKTGTTTN 924
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 127 WYKSHEEQISKTKAANRESAKNAERAQARGSESSVEEGNEWARVSEL 173
W HE + K NRE AE +++ E + E AR +L
Sbjct: 208 WEADHERDVKKVSGGNRECDVKAEENKSKPEERKEKVVEEQARRYQL 254
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 884
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 121 KKELEDWYKSHEEQISKTKAANRESAKNAERAQARGSESSVEEGNEWARVS-ELCDFGPR 179
KK+ D + H + + +E K ER++ R +E+S ++ + S E D R
Sbjct: 772 KKDSRDVERPHRTNSKEDRGKRKEKEKEEERSRHRRAENSSKDKRRRSPTSNESSDDSKR 831
Query: 180 RGRDVARLRSI 190
+ R +R RS+
Sbjct: 832 KSR--SRRRSV 840
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 121 KKELEDWYKSHEEQISKTKAANRESAKNAERAQARGSESSVEEGNEWARVS-ELCDFGPR 179
KK+ D + H + + +E K ER++ R +E+S ++ + S E D R
Sbjct: 742 KKDSRDVERPHRTNSKEDRGKRKEKEKEEERSRHRRAENSSKDKRRRSPTSNESSDDSKR 801
Query: 180 RGRDVARLRSI 190
+ R +R RS+
Sbjct: 802 KSR--SRRRSV 810
>At5g16500.1 68418.m01928 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 636
Score = 27.5 bits (58), Expect = 7.0
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 118 QIAKKELEDWYKSHEEQISKTKAANRESAKNAERAQARGSESSVEEGNEWARVSELCDFG 177
Q A+KE E K +EQ ++ ES N+E+ Q +S +E+ E + S D G
Sbjct: 415 QKAEKEEESTSKKRQEQEETATDSDDESDSNSEKDQEE-EQSQLEKARESS--SSSSDSG 471
Query: 178 PRRGRDVARLRSIVLQLKQAGSRPNYPS 205
R R + + LK + S NY S
Sbjct: 472 SER-RSIDETNATAQSLKISYS--NYSS 496
>At3g55060.1 68416.m06115 expressed protein contains weak similarity
to intracellular protein transport protein USO1
(Swiss-Prot:P25386) [Saccharomyces cerevisiae];
expression supported by MPSS
Length = 896
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/75 (24%), Positives = 35/75 (46%)
Query: 122 KELEDWYKSHEEQISKTKAANRESAKNAERAQARGSESSVEEGNEWARVSELCDFGPRRG 181
K+L+ EE I + ++ +E+AK R A S+ S E G W+ + +
Sbjct: 791 KDLKHQMLKKEESIRRLESNLQEAAKEMARLNALLSKVSNERGQIWSEYKQYGEKNMLLN 850
Query: 182 RDVARLRSIVLQLKQ 196
+ L+ +V +L++
Sbjct: 851 SENETLKGMVEKLEE 865
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 128 YKSHEEQISKTKAANRESAKNAERAQARG 156
YK HEE+ +T+ NRE A+ RA RG
Sbjct: 115 YKKHEEEDEETRRQNRE-ARGVCRAFQRG 142
>At2g14010.1 68415.m01557 hypothetical protein and genefinder
Length = 833
Score = 27.5 bits (58), Expect = 7.0
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 23 EQNQLAGLEDELETSAPPPAISTSTN----GFDDFVEVPSASAF-DANGLLDDAPLGST 76
+ +++ +DE ET+A PP IS + N DD V A D GL D+A L S+
Sbjct: 552 QDDEIVSGKDE-ETTAAPPTISDAANLSKPSADDIVSERYAERISDPPGLNDEANLSSS 609
>At3g29575.1 68416.m03714 expressed protein
Length = 231
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 125 EDWYKSHE-EQISKTKAANRESAKNAERAQARGSESSVEEGN 165
E+W K E + + + +A + S K + G E VEEG+
Sbjct: 67 EEWRKRKELQSLRRLEAKRKRSEKQRKHKACGGEEKVVEEGS 108
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; contains TIGRFAM TIGR00864:
polycystin cation channel protein; similar to
fimbriae-associated protein Fap1 [Streptococcus
parasanguinis] (GI:3929312)
Length = 1498
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 121 KKELEDWYKSHE-EQISKTKAANRESAKNAERAQARGSESSVEEGNEWARV 170
+KE + H E+I+K K A K E+A+AR + +E E +V
Sbjct: 1228 QKEAAKMKEQHRLEEIAKAKEAMERKKKREEKAKARAVLKAQKEAEEREKV 1278
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.309 0.127 0.358
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,765,310
Number of Sequences: 28952
Number of extensions: 182890
Number of successful extensions: 573
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 558
Number of HSP's gapped (non-prelim): 26
length of query: 210
length of database: 12,070,560
effective HSP length: 78
effective length of query: 132
effective length of database: 9,812,304
effective search space: 1295224128
effective search space used: 1295224128
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 57 (27.1 bits)
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