Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001059-TA|BGIBMGA001059-PA|undefined
(394 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 31 0.37
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 30 0.65
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom... 29 1.1
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces... 29 1.5
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 28 2.6
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 27 4.6
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 27 4.6
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 6.1
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 27 6.1
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 26 8.0
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 8.0
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 26 8.0
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1... 26 8.0
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 30.7 bits (66), Expect = 0.37
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 59 LLEVLADDLW-IKALDVQNCGLTEATA-TATLNMMRSNTTLVVLDLRHNSEISIESLSKY 116
+LE ++D+ +KAL++ NCGL E T + L++ + R +++S++ LS+
Sbjct: 137 ILEYISDNCPNLKALNIGNCGLVEDTGMVQIIKRCPYLNRLIIPNCRKLTDVSLQILSEK 196
Query: 117 SWL--GNVSGC 125
L ++SGC
Sbjct: 197 EDLIELDISGC 207
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 29.9 bits (64), Expect = 0.65
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 249 IQQAFKDIYEFIKNNQCHGQCLVDTANDNNVEETIVNEATEAEMHGYSELRANIVAKKAQ 308
I+ A K EF +N GQ +DN + E+ E+E +E +N+ KK
Sbjct: 186 IKFADKSQEEFNENGPPSGQPNGHIESDNESKSPSQKESNESEDIQIAETPSNVTPKKKP 245
Query: 309 STHV-KMLTNAKMTKKMTKS 327
S V K+ N ++T K ++
Sbjct: 246 SPEVPKLPDNRELTVKQVEN 265
>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 151 PSKYLAKS--SVVKKEKDYTEVLEEQLQEEISHRQQLEE 187
P L+KS E DY E L++ L E RQ+LEE
Sbjct: 94 PDSILSKSVPEAYSLELDYAEFLDDSLMEAYELRQELEE 132
>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/58 (22%), Positives = 30/58 (51%)
Query: 65 DDLWIKALDVQNCGLTEATATATLNMMRSNTTLVVLDLRHNSEISIESLSKYSWLGNV 122
DDL+ + L ++NC L+ + + L + ++ + +++ IE L + + L N+
Sbjct: 311 DDLYSRVLSIKNCFLSSESLDSELQSQFRSIRRILQRITVEAKVDIEPLKQTNILDNI 368
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 132 KTVVKNGAVKDRGTITKNAPSKYLAKSSVVKKEKDYTEV 170
K + N + K R + N K K++VVK+E+D+ E+
Sbjct: 69 KKNMSNSSSKKRAKVMGNGGLKNGKKTAVVKEEEDFNEI 107
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.1 bits (57), Expect = 4.6
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 132 KTVVKNGAVKDRGTITKNAPSKYLAKSSVVKKEKDYTEVLEEQLQEEISHRQQLEE 187
+ +V N A++ + T N + ++ + E+QLQE H QQLEE
Sbjct: 166 EVMVSNQALQMKDTNLTNLEKLFADSREQLETKCKELAAAEQQLQELSVHNQQLEE 221
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 27.1 bits (57), Expect = 4.6
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 103 RHNSEISIESLSKYSWLGNVSGCSNDGRIKTVVKNGAVKDRGTITKNAPSKYLAKSSVVK 162
R N +E+ S + L S + + T + NG KD G T+ +K + V
Sbjct: 12 RDNPGDKVETQSDKNHLPKASPSQSQSPVNTSLHNGDGKDNGVATEPVENKQILSERSVT 71
Query: 163 KEKDY 167
++ DY
Sbjct: 72 RD-DY 75
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.6 bits (56), Expect = 6.1
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 67 LWIKALDVQNCGLTEATATATL---NMMRSNTTLVVLDLRHNSEISIESLSKYSWLGNVS 123
L I +L+ + L + A+++L N+ + + T V L L N ++ E S +
Sbjct: 979 LKITSLEQRIVILQDEIASSSLRCENITKDSETRVALLLEENKHLNNELSSHRNAEKQHL 1038
Query: 124 GCSNDGRIKTV-VKNGAVKDRGTITKNAPSKYLAKSSVVKKEKDYTEVLE--EQLQEEIS 180
ND + + + V K R K A+S++ K +DYT+ LE E L +EI+
Sbjct: 1039 EKENDYKQQLLLVTEDLRKTREDYEKELLRHADARSTLQKLREDYTKALEQVEDLNKEIA 1098
Query: 181 HRQQLEE 187
+ + E
Sbjct: 1099 LKAGINE 1105
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 26.6 bits (56), Expect = 6.1
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 147 TKNAPSKYLAKSSVVKKEKDYTEVLEEQLQEEISHRQQLEEL 188
+ N ++ +++ EK + +E+ L E +H+QQLEE+
Sbjct: 118 SSNLSMNTISSTALTPTEKILQKRIEDLLYERQNHQQQLEEV 159
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 8.0
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 118 WLG----NVSGCSNDGRIKTVVKNGAVKDRGTITKNAPSKYLAKSSVVKKEKDYTEVLEE 173
WLG N G NDG +K K +G + S + + SVVK K +E +
Sbjct: 32 WLGVELLNGKG-KNDGSVKGKRYFSCEKGKGIFVRACSSNVMKRPSVVKSRKKGSENISN 90
Query: 174 QLQEEISHRQQ 184
+++ + +Q+
Sbjct: 91 FMEKTKAIKQK 101
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 8.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 71 ALDVQNCGLTEATATATLNMMRSNT 95
AL ++ CGL+EAT LN S T
Sbjct: 359 ALKIKYCGLSEATYNVQLNSFFSRT 383
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 8.0
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 266 HGQCLVDTANDNNVEETIVNEA--TEAEMHGYS 296
H CL +T ND N+ E E EA+ GY+
Sbjct: 490 HSMCLPNTTNDINIFEEFEEEKDNVEAQKMGYT 522
>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 8.0
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 22 NWIHTLRYRL--PDLDTMAGLRRITLCGNTQLGDAGLTKLLEVLADDLWIKALDVQNCGL 79
NW+HT R R+ P + M L + + +GD G T + +L D VQ L
Sbjct: 328 NWVHTFRLRIYGPAVLPMLALYIVNMM--EAIGDIGATSDVSMLEVDGPAFDARVQGGIL 385
Query: 80 TEATATATLNMMRSNTTLVVLDLRHNSEISI 110
+ A+ ++M TT + ++N IS+
Sbjct: 386 GDGLASLIASLM--TTTPLTTFAQNNGVISL 414
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.128 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,427,953
Number of Sequences: 5004
Number of extensions: 49003
Number of successful extensions: 147
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 14
length of query: 394
length of database: 2,362,478
effective HSP length: 74
effective length of query: 320
effective length of database: 1,992,182
effective search space: 637498240
effective search space used: 637498240
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 55 (26.2 bits)
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