GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001059-TA|BGIBMGA001059-PA|undefined
         (394 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   1.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   1.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   3.8  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   8.7  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 255 DIYEFIKNNQCHGQCLVDTANDNNVEET 282
           DI   +  NQ  GQC+ + ++D N +ET
Sbjct: 756 DINNPLSVNQLTGQCVRNDSSDTNGKET 783


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 255 DIYEFIKNNQCHGQCLVDTANDNNVEET 282
           DI   +  NQ  GQC+ + ++D N +ET
Sbjct: 648 DINNPLSVNQLTGQCVRNDSSDTNGKET 675


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 272  DTANDNNVEETIVNEATEAEMHG 294
            DT  D N ++T +  A+E  +HG
Sbjct: 1144 DTWFDENTKDTKITAASETILHG 1166


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 245 TLSYIQQAFKDIYEFIKNNQ 264
           TLS I Q   D++ F + NQ
Sbjct: 162 TLSEIYQFIMDLFPFYRQNQ 181


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.128    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,262
Number of Sequences: 317
Number of extensions: 2307
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 394
length of database: 114,650
effective HSP length: 58
effective length of query: 336
effective length of database: 96,264
effective search space: 32344704
effective search space used: 32344704
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 44 (21.8 bits)