Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001059-TA|BGIBMGA001059-PA|undefined
(394 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0975 + 33227431-33227730,33228556-33228636,33228883-332296... 36 0.042
02_05_0982 - 33303500-33304011,33304091-33304208,33304606-333047... 36 0.074
05_03_0052 + 7827973-7828031,7829012-7829139,7829243-7829305,783... 33 0.40
06_01_0928 - 7159857-7159922,7159923-7160024,7160126-7160206,716... 31 1.2
11_06_0003 - 19155407-19155953,19156114-19156148 31 2.1
10_01_0275 - 2904601-2904900,2905083-2905233,2905522-2905598,290... 31 2.1
06_02_0052 - 10964659-10964919,10964938-10965006,10965069-109651... 31 2.1
01_03_0185 - 13565903-13565932,13565933-13566013,13566104-135661... 29 4.9
08_02_1072 + 24114656-24114997,24115100-24115333,24115487-241155... 29 6.4
>02_05_0975 +
33227431-33227730,33228556-33228636,33228883-33229680,
33230829-33231005,33231159-33231274,33231422-33231520,
33231598-33232040,33232147-33232184,33232343-33232600,
33233378-33233525,33233989-33234108,33234884-33234984,
33235090-33235213,33235386-33235498,33236103-33236214,
33236298-33236432,33236527-33236593,33236685-33236741,
33236774-33236900,33237221-33237338,33237418-33237929
Length = 1347
Score = 36.3 bits (80), Expect = 0.042
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 49 TQLGDAGLTKLLEVLAD-DLWIKALDVQNCGLTEATATATLNMMRSNTTLVVLDLRHN 105
T+L +A KLL+ L + ++ + V +CGL + + T L+ +R + T+ VLDL HN
Sbjct: 875 TKLSEAPNKKLLKKLYNLEVSEDEVIVSDCGLQDLSITPFLDALRLHKTIAVLDLSHN 932
>02_05_0982 -
33303500-33304011,33304091-33304208,33304606-33304726,
33304811-33304877,33304968-33305102,33305186-33305297,
33305852-33306009,33306177-33306300,33306406-33306542,
33307284-33307403,33307878-33308025,33308674-33308931,
33309090-33309127,33309232-33309674,33309761-33309845,
33310063-33310123,33310277-33310453,33311611-33312408,
33314394-33314693
Length = 1303
Score = 35.5 bits (78), Expect = 0.074
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 13/100 (13%)
Query: 7 IAELVKYQKIHRYSENWIHTLRYRLPDLDTMAGLRRITLCGNTQLGDAGLTKLLEVLAD- 65
+ +++ + H Y+E+W+ +L + C T+L +A KLL+ L +
Sbjct: 807 VIDVIPHLIYHVYNEDWVPKRLMKL----------YVDFC--TKLSEAPNKKLLKKLYNL 854
Query: 66 DLWIKALDVQNCGLTEATATATLNMMRSNTTLVVLDLRHN 105
++ + V +CGL + + T L+ ++ + T+ VLDL HN
Sbjct: 855 EVSEDEVIVSDCGLQDLSITPFLDALKLHKTIAVLDLSHN 894
>05_03_0052 +
7827973-7828031,7829012-7829139,7829243-7829305,
7830323-7830444,7830557-7830672,7830760-7831567,
7831800-7832528,7832638-7832859,7833089-7833184,
7833273-7833467,7834303-7834416,7835368-7835651,
7836216-7836293,7836326-7836449,7836739-7836786
Length = 1061
Score = 33.1 bits (72), Expect = 0.40
Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 11/153 (7%)
Query: 43 ITLCGNTQLGDAGLTKLLEVLADDLWIKALDVQNCGLTEATATATLNMMRSNTTLVVLDL 102
I LCG T LG + L+ DL++ L ++ + + + + + T+ +L L
Sbjct: 211 IALCGETILGSHNVLVALDETRSDLFLIELKGESISYNKVHISDLVQDL--SGTVKLLPL 268
Query: 103 RHNSEISIESLSKYSWLGNVSGCSNDGRIKTVVKNGAVKDRGTITKNAPSKYLAKSS--- 159
N I++++ S S L + G I++ + AV D TIT+ + + + +
Sbjct: 269 MSNGVIALQASSTVSLL-KLKGIDGLEVIQSFEQPAAVSDALTITEKDEAFAVVQHTGSE 327
Query: 160 ---VVKKEKDYT-EVLEEQLQEEISHRQQLEEL 188
VVK D T EV+ E++ + HR ++++
Sbjct: 328 IEFVVKFTSDVTGEVIREKINID-QHRGNIQKV 359
>06_01_0928 -
7159857-7159922,7159923-7160024,7160126-7160206,
7160289-7160384,7160462-7160566,7160648-7160722,
7161372-7161431,7161960-7162090,7162175-7162250,
7163390-7163459,7163603-7163664,7163788-7163871,
7163973-7164047,7164448-7164585,7164733-7164791,
7164910-7165123,7167996-7168091,7168701-7169639
Length = 842
Score = 31.5 bits (68), Expect = 1.2
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 40 LRRITLCGNTQLGDAGLTKLLEVLADDLWIKALDVQNCGLTEATATATLNMMRSNTTLVV 99
L+ + + G Q GD GL L E LA + + +D G+T A +++ NT L
Sbjct: 410 LKNVNMAGR-QFGDEGLFFLAESLAYNKSAEEVDFSGNGITAVGIEAFDGILQINTALKS 468
Query: 100 LDLRHNS 106
L+L N+
Sbjct: 469 LNLSGNA 475
Score = 29.9 bits (64), Expect = 3.7
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 51 LGDAGLTKLLEVLADDLWIKALDVQNCGLTEATATATLNMMRSNTTLVVLDLRHN 105
+G G+ L +VL + I+ L + C + + A + ++ NTTL LDLR N
Sbjct: 701 IGPEGVKALCDVLKFNGKIQTLKLGWCQIGVSGAEFVADCLKYNTTLSTLDLRAN 755
>11_06_0003 - 19155407-19155953,19156114-19156148
Length = 193
Score = 30.7 bits (66), Expect = 2.1
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 147 TKNAPSKYLAKSSVVKKEKDYTEVLEEQLQEEISHRQQLEE 187
+K P++ + VV +++D+ V EE+ +EE ++ EE
Sbjct: 28 SKQVPNQVTVRDEVVSRDEDFMVVAEEEEEEEEEEEEEEEE 68
>10_01_0275 -
2904601-2904900,2905083-2905233,2905522-2905598,
2907201-2907390,2908796-2908981,2910521-2910571,
2911476-2911885,2912252-2912509,2912768-2913070
Length = 641
Score = 30.7 bits (66), Expect = 2.1
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 31 LPDLDTMAGLRRITLCGNTQLGDAGLTKLLEVLADDLWIKALDVQNCGLTEATATATLNM 90
L +D L R+ +CG Q+ D GLT ++ D + + D + G + T
Sbjct: 498 LATVDQCRFLERLDICGCNQITDYGLTTIIRECHDLVHLNISDTKKIG--DTTLAKVGEG 555
Query: 91 MRSNTTLVVLDLRHNSEISIESLSK 115
R L++L S++ +E +++
Sbjct: 556 FRKLKHLMMLRCDAISDVGLEDIAR 580
>06_02_0052 -
10964659-10964919,10964938-10965006,10965069-10965138,
10965861-10966420
Length = 319
Score = 30.7 bits (66), Expect = 2.1
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 35 DTMAGLRRITLCGNTQLGDAGLTKLLEVLAD-DLWIKALDVQNCGLTEATATATLNMMRS 93
DT+A L + + N + + G L E AD + W + + V +TE TA M+
Sbjct: 99 DTIASLSELIVVNNAGVAEPGAVYLHE--ADVEAWARMVRVNVSAVTEVTAAVLPGMVAR 156
Query: 94 NTTLVVLDLRHNSEISIESLSKYS 117
V+++ + SI SL Y+
Sbjct: 157 GRGGAVVNIGSAASESIPSLPLYT 180
>01_03_0185 -
13565903-13565932,13565933-13566013,13566104-13566175,
13566800-13566932,13567068-13567107,13567192-13567258,
13567453-13567719
Length = 229
Score = 29.5 bits (63), Expect = 4.9
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 239 IPIDQNTLSYIQQAFKDIYEFIKNNQCHGQCLVDTA-NDNNVEETIVNEATEAEMHGYSE 297
I +DQ Y+ Q +Y + + Q +D A N N+ EE+I EA+++G E
Sbjct: 103 IELDQRQKKYLWQRGLSLYYLDRFEEGAEQFRLDVAANPNDTEESIWCFLCEAQLYGVDE 162
Query: 298 LR 299
R
Sbjct: 163 AR 164
>08_02_1072 +
24114656-24114997,24115100-24115333,24115487-24115552,
24115661-24115729,24115826-24115903,24116025-24116219,
24116551-24116664
Length = 365
Score = 29.1 bits (62), Expect = 6.4
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 286 EATEAEMHGYSELRANIVAKKAQSTHVKMLTNAKMTKKMTKSAHLLGD-VPGSQR 339
+A EA+ GYS +R A+K Q+T+ L +K+++ LL D VPG +
Sbjct: 164 DAGEAQKEGYSHVR----ARKGQATNNHSLAERLRREKISERMKLLQDLVPGCSK 214
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.128 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,614,976
Number of Sequences: 37544
Number of extensions: 280253
Number of successful extensions: 679
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 669
Number of HSP's gapped (non-prelim): 14
length of query: 394
length of database: 14,793,348
effective HSP length: 84
effective length of query: 310
effective length of database: 11,639,652
effective search space: 3608292120
effective search space used: 3608292120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 61 (28.7 bits)
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